GEO DataSets

(Submitter supplied) The placenta is arguably the most anatomically variable organ in mammals. Understanding gene expression patterns among placentas from multiple species can illuminate the molecular basis of placenta function as well as potentially enrich our knowledge of the biology of obstetrical syndromes. We measured the expression profiles of the term placenta of multiple therian mammals using RNA-Seq. We identified multiple genes and transcripts which are differentially expressed across lineages including prolactin, relaxin, and galectins, as well as identifying the non-housekeeping genes which are core to placenta function (such as components of annexin complexes) in all species studied.

Organism:

Dasypus novemcinctus; Pan paniscus; Canis lupus familiaris; Monodelphis domestica; Loxodonta africana; Bos taurus; Ateles fusciceps; Mus musculus

Type:

Expression profiling by high throughput sequencing

8 related Platforms

8 Samples

Download data: FASTA, FPKM_TRACKING

(Submitter supplied) The salamander microRNA expression between mid-bud limb regenerating blastemas (17 days post amputation) and non-regenerating stump tissues was compared by microarray analysis.

Organism:

Ambystoma mexicanum; Gorilla gorilla; Pan troglodytes; Bos taurus; Rattus norvegicus; Gallus gallus; Mus musculus; Human alphaherpesvirus 1; Human betaherpesvirus 5; Human immunodeficiency virus 1; Danio rerio; Ateles sp.; Homo sapiens; Monodelphis domestica; Betapolyomavirus hominis; Lemur catta; human gammaherpesvirus 4; JC polyomavirus; Human gammaherpesvirus 8; Betapolyomavirus macacae

Type:

Non-coding RNA profiling by array

Platforms:

GPL13686 GPL7724

7 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Oryza sativa; Saccharum officinarum; Bombyx mori; Lemur catta; Lagothrix lagotricha; Macaca nemestrina; Homo sapiens; Canis lupus familiaris; Sus scrofa; Human betaherpesvirus 5; Monodelphis domestica; Takifugu rubripes; Physcomitrium patens; Zea mays; Danio rerio; Macaca mulatta; Pan troglodytes; Pongo pygmaeus; human gammaherpesvirus 4; Gallid alphaherpesvirus 2; Schmidtea mediterranea; Betapolyomavirus macacae; Arabidopsis thaliana; Sorghum bicolor; Caenorhabditis briggsae; Caenorhabditis elegans; Anopheles gambiae; Drosophila melanogaster; Drosophila pseudoobscura; Apis mellifera; Xenopus laevis; Xenopus tropicalis; Ateles geoffroyi; Gorilla gorilla; Bos taurus; Mus musculus; Rattus norvegicus; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Saguinus labiatus; Tetraodon nigroviridis; Populus trichocarpa; Glycine max; Medicago truncatula; Gallus gallus; Pan paniscus; Ovis aries; Murid gammaherpesvirus 4

Type:

Expression profiling by array; Non-coding RNA profiling by array

Platforms:

GPL10558 GPL6844

16 Samples

Download data: GPR

(Submitter supplied) Background: Similar to replicating myoblasts, many rhabdomyosarcoma cells express the myogenic determination gene MyoD. In contrast to myoblasts, rhabdomyosarcoma cells do not make the transition from a regulative growth phase to terminal differentiation. Previously we demonstrated that the forced expression of MyoD with its E-protein dimerization partner was sufficient to induce differentiation and suppress multiple growth-promoting genes, suggesting that the dimer was targeting a switch that regulated the transition from growth to differentiation. more...

Organism:

Medicago truncatula; Sorghum bicolor; Zea mays; Caenorhabditis briggsae; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Ateles geoffroyi; Mus musculus; Human gammaherpesvirus 8; Saguinus labiatus; Schmidtea mediterranea; Arabidopsis thaliana; Oryza sativa; Saccharum officinarum; Caenorhabditis elegans; Anopheles gambiae; Apis mellifera; Danio rerio; Macaca mulatta; Gorilla gorilla; Pongo pygmaeus; Homo sapiens; Bos taurus; Gallid alphaherpesvirus 2; Macacine gammaherpesvirus 4; Tetraodon nigroviridis; Physcomitrium patens; Populus trichocarpa; Glycine max; Bombyx mori; Lemur catta; Lagothrix lagotricha; Pan troglodytes; Sus scrofa; Human betaherpesvirus 5; human gammaherpesvirus 4; Betapolyomavirus macacae; Drosophila melanogaster; Drosophila pseudoobscura; Macaca nemestrina; Pan paniscus; Canis lupus familiaris; Ovis aries; Rattus norvegicus; Monodelphis domestica; Takifugu rubripes; Murid gammaherpesvirus 4

Type:

Non-coding RNA profiling by array

Platform:

GPL6844

4 Samples

Download data: GPR

(Submitter supplied) In animals, the maternal-to-embryonic transition (MET) is an important step occurring in the first days of early development. This important transition involves the degradation of maternal transcripts that have been stocked during oogenesis and used until this transition. Moreover, some precise and specific control mechanisms must govern the adequate synchronization of the MET events to promote embryonic genome activation. more...

Organism:

Ateles sp.; Macaca mulatta; Pan paniscus; Monodelphis domestica; Lemur catta; Lagothrix; Macaca nemestrina; Canis lupus familiaris; Rhinopithecus bieti; Saguinus imperator; Pan troglodytes; Bos taurus; Ovis aries; Rattus norvegicus; Symphalangus syndactylus; Gorilla gorilla; Pongo abelii; Homo sapiens; Sus scrofa; Cricetulus griseus; Mus musculus

Type:

Expression profiling by array

Platform:

GPL15194

1 Sample

Download data: TXT

(Submitter supplied) MicroRNAs are small non-coding RNAs that regulate a variety of biological processes. In the last version of the miRBase database (Release 17), 720 mouse microRNAs are accompanied by only 408 rat microRNAs. Given the importance of rat as a model organism, we used next generation sequencing and microarray technologies to discover novel microRNAs in rat kidneys.

Organism:

Oryzias latipes; Pan troglodytes; Pongo pygmaeus; Ovis aries; Taeniopygia guttata; Xenopus laevis; Macaca nemestrina; Canis lupus familiaris; Rattus norvegicus; Takifugu rubripes; Rhinopithecus bieti; Saguinus labiatus; Danio rerio; Gallus gallus; Ornithorhynchus anatinus; Macaca mulatta; Pan paniscus; Equus caballus; Petromyzon marinus; Xenopus tropicalis; Ateles geoffroyi; Symphalangus syndactylus; Homo sapiens; Sus scrofa; Bos taurus; Mus musculus; Tetraodon nigroviridis

Type:

Non-coding RNA profiling by array

Platform:

GPL14819

6 Samples

Download data: TXT

(Submitter supplied) MicroRNAs (miRNAs) are small noncoding RNAs that negatively regulate gene expression post-transcriptionally. They play a critical role in developmental and physiological processes and have been implicated in the pathogenesis of several diseases including cancer. To identify miRNA signatures associated with different stages of neoplastic development, we examined the expression profile of 776 primate miRNAs in the following cells: primary African green monkey kidney (pAGMK) cells; spontaneously immortalized, non-tumorigenic, low-passage VERO cells (10-87 LP); tumorigenic, high-passage VERO cells (10-87 HP); and a cell line (10-87 T) derived from a 10-87 HP cell tumor xenograft in athymic nude mice. more...

Organism:

Ateles geoffroyi; Gorilla gorilla; Saguinus labiatus; Chlorocebus aethiops; Macaca mulatta; Pan troglodytes; Pongo pygmaeus; Lemur catta; Lagothrix lagotricha; Macaca nemestrina; Homo sapiens; Pan paniscus

Type:

Non-coding RNA profiling by array

Platform:

GPL10649

9 Samples

Download data: TXT

(Submitter supplied) LC Sciences Human miRNA Array Based on Sanger miRBase Release 12.0 miRHuman_12.0_YU_080930 Part No.: MRA-1001C Protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...

Organism:

Danio rerio; Gallus gallus; Lemur catta; Ateles sp.; Gorilla gorilla; Pan troglodytes; Homo sapiens; Bos taurus; Mus musculus; Rattus norvegicus; Monodelphis domestica

1 Series

1 Sample

Download data: TXT

(Submitter supplied) catalog number : MRA-1031 Protocol: Arrays are made based on µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://www.mirbase.org/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...

Organism:

Lemur catta; Saguinus imperator; Ateles sp.; Lagothrix; Macaca mulatta; Macaca nemestrina; Symphalangus syndactylus; Gorilla gorilla; Pan paniscus; Pan troglodytes; Pongo abelii; Homo sapiens; Canis lupus familiaris; Sus scrofa; Bos taurus; Ovis aries; Cricetulus griseus; Mus musculus; Rattus norvegicus; Monodelphis domestica; Rhinopithecus bieti

1 Series

1 Sample

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(Submitter supplied) Platform table annotations based on miRBase release version 17 catalog number : MRA-1033 http://www.lcsciences.com/applications/transcriptomics/mirna-profiling/mirna/mirna-available-arrays/vertebrates-array-content/ Protocol: Arrays are made based µParaflo microfluidic technology.

Organism:

Petromyzon marinus; Danio rerio; Oryzias latipes; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Ornithorhynchus anatinus; Ateles geoffroyi; Macaca mulatta; Macaca nemestrina; Symphalangus syndactylus; Pan paniscus; Pan troglodytes; Pongo pygmaeus; Homo sapiens; Canis lupus familiaris; Equus caballus; Sus scrofa; Bos taurus; Ovis aries; Mus musculus; Rattus norvegicus; Takifugu rubripes; Taeniopygia guttata; Rhinopithecus bieti; Saguinus labiatus; Tetraodon nigroviridis

1 Series

6 Samples

Download data: TXT

(Submitter supplied) Microarray assay was performed by LC Science Company. The microfluidic PicoArray reactor is made from silicon using standard microelectronic fabrication procedures. The reactor contains three topographical features: pico- reaction chambers, fluid microchannels, and inlet/outlet through holes. The chip contains 128 x 31 (total 3698) individual reaction chambers, each with an internal volume of 270 pl. more...

Organism:

Ornithorhynchus anatinus; Lemur catta; Saguinus imperator; Ateles sp.; Lagothrix; Macaca mulatta; Macaca nemestrina; Symphalangus syndactylus; Gorilla gorilla; Pan paniscus; Pan troglodytes; Pongo; Homo sapiens; Canis lupus familiaris; Equus caballus; Sus scrofa; Bos taurus; Ovis aries; Cricetulus griseus; Mus musculus; Rattus norvegicus; Monodelphis domestica; Rhinopithecus bieti

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(Submitter supplied) Primates miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 10.0 Protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://www.mirbase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...

Organism:

Lemur catta; Ateles geoffroyi; Lagothrix lagotricha; Macaca mulatta; Macaca nemestrina; Gorilla gorilla; Pan paniscus; Pan troglodytes; Pongo pygmaeus; Homo sapiens; Saguinus labiatus

1 Series

9 Samples

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(Submitter supplied) The array contains microRNA probes for multiple organisms annotated in the miRBase database (Release 8.1). Protocol: The multi-organism array was manufactured by spotting the contents of v8.1 of the miRCURY LNA Array ready to spot probe set from Exiqon onto glass microscope slides.

Organism:

Physcomitrium patens; Populus trichocarpa; Arabidopsis thaliana; Glycine max; Medicago truncatula; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Zea mays; Caenorhabditis briggsae; Caenorhabditis elegans; Bombyx mori; Anopheles gambiae; Drosophila melanogaster; Drosophila pseudoobscura; Apis mellifera; Danio rerio; Xenopus laevis; Xenopus tropicalis; Gallus gallus; Lemur catta; Ateles geoffroyi; Lagothrix lagotricha; Macaca mulatta; Macaca nemestrina; Gorilla gorilla; Pan paniscus; Pan troglodytes; Pongo pygmaeus; Homo sapiens; Canis lupus familiaris; Sus scrofa; Bos taurus; Ovis aries; Mus musculus; Rattus norvegicus; Human betaherpesvirus 5; human gammaherpesvirus 4; Gallid alphaherpesvirus 2; Monodelphis domestica; Takifugu rubripes; Murid gammaherpesvirus 4; Human gammaherpesvirus 8; Macacine gammaherpesvirus 4; Saguinus labiatus; Schmidtea mediterranea; Tetraodon nigroviridis; Betapolyomavirus macacae

2 Series

4 Samples

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