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Links from GEO DataSets

Items: 20

1.

Extraocular muscle, expression changes in critical period (Porter lab)

(Submitter supplied) Evaluation of extraocular muscle (EOM) critical period by expression profiling in dark reared rat. Data form part of publication: Investigative Ophthalmology and Visual Sciences 44: 3842-3855, 2003. Keywords: other
Organism:
Rattus norvegicus
Type:
Expression profiling by SAGE
Platform:
GPL23
2 Samples
Download data
Series
Accession:
GSE497
ID:
200000497
2.

EOM and hindlimb muscle development

(Submitter supplied) Conserved and muscle group-specific gene expression patterns shape postnatal development of the novel extraocular muscle phenotype. Comparison of postnatal development of extraocular and hindlimb muscle between birth and P45. Keywords: parallel sample
Organism:
Rattus norvegicus
Type:
Expression profiling by array
Dataset:
GDS621
Platform:
GPL85
36 Samples
Download data: CEL
Series
Accession:
GSE903
ID:
200000903
3.
Full record GDS621

Extraocular and hindlimb muscle development

Analysis of hindlimb and extraocular muscle (EOM) between birth and postnatal day 45. Dissecting allotype-specific regulatory mechanisms may help explain differential muscle group sensitivity to a variety of metabolic and neuromuscular diseases.
Organism:
Rattus norvegicus
Type:
Expression profiling by array, count, 6 age, 2 tissue sets
Platform:
GPL85
Series:
GSE903
36 Samples
Download data: CEL
DataSet
Accession:
GDS621
ID:
621
4.

Expression profiling of extraocular muscles

(Submitter supplied) The extraocular muscles (EOM) are anatomically and physiologically distinct from other skeletal muscles. EOM are preferentially affected in mitochondrial myopathies, but spared in Duchenne's muscular dystrophy. The anatomical and pathophysiological properties of EOM have been attributed to their unique molecular makeup: an allotype. We used expression profiling to define molecular features of the EOM allotype. more...
Organism:
Rattus norvegicus
Type:
Expression profiling by array
Dataset:
GDS254
Platform:
GPL85
16 Samples
Download data: CEL
Series
Accession:
GSE471
ID:
200000471
5.
Full record GDS254

Muscle, normal extraocular, profile

Molecular definition of extraocular muscles (EOM). EOM are anatomically and physiologically distinct from other skeletal muscles.
Organism:
Rattus norvegicus
Type:
Expression profiling by array, count, 2 tissue sets
Platform:
GPL85
Series:
GSE471
16 Samples
Download data: CEL
DataSet
Accession:
GDS254
ID:
254
6.

SAGE profile of rat hippocampus mRNA from Wistar rats

(Submitter supplied) SAGE profile of rat hippocampus mRNA from Wistar rats
Organism:
Rattus norvegicus
Type:
Expression profiling by SAGE
Platform:
GPL23
1 Sample
Download data
Series
Accession:
GSE25750
ID:
200025750
7.

Rat brain microvessel SAGE

(Submitter supplied) SAGE analysis of genes expressed in rat brain microvessels. Keywords: Novel gene identification
Organism:
Rattus norvegicus
Type:
Expression profiling by SAGE
Platform:
GPL23
1 Sample
Download data
Series
Accession:
GSE3696
ID:
200003696
8.

Muscle, normal extraocular, profile

(Submitter supplied) Molecular definition of human extraocular muscles (EOM). Human EOM were compared with limb (quadriceps femoris) muscle. Keywords = Eye Keywords = EOM Keywords = Muscle Keywords = DMD Keywords = Myasthenia Gravis Keywords: other
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS525
Platform:
GPL96
5 Samples
Download data: CEL
Series
Accession:
GSE873
ID:
200000873
9.
Full record GDS525

Extraocular and limb muscle comparison

Molecular definition of extraocular muscle (EOM). Autopsy superior rectus EOM compared with biopsy limb quadriceps femoris muscle.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 tissue sets
Platform:
GPL96
Series:
GSE873
5 Samples
Download data: CEL
DataSet
Accession:
GDS525
ID:
525
10.

SAGE Profiles of Rat Lung Tissues

(Submitter supplied) Thirty-two SD rats (male, 150 grams, 50days) were randomly divided into four groups: normal control group, asthma group, acupuncture-treated asthma group and acupuncture-treated normal group. The rat lungs were removed immediately after the rats were died. The rat lungs were conserved in liquid nitrogen. SAGE analyses were dependent on the classic protocol (Velculescu VE, et al, Serial Analysis of Gene Expression Detailed Protocol, version 1.0e, 2000) available at the SAGENET website. more...
Organism:
Rattus norvegicus
Type:
Expression profiling by SAGE
Platform:
GPL23
4 Samples
Download data
Series
Accession:
GSE2475
ID:
200002475
11.

UPenn_canine_retinal_EST_4.5k array

(Submitter supplied) GPL9743 represents two different print sets, v1 and v2. While the order of the clones are not exactly the same in v1 and v2, the clones themselves are identical. The Platform data table reflects a condensed representation of the print sets' replicate features. The v1 and v2 full array layout (.gal) files, representing all of the individual features, are linked below as supplementary files. Protocol: EST clones were obtained from a normalized canine retinal library cloned into pGEM 11ZF(+) vector (Promega). more...
Organism:
Canis lupus familiaris
1 Series
12 Samples
Download data: GAL
Platform
Accession:
GPL9743
ID:
100009743
12.

Human Reticulocyte

(Submitter supplied) Reticulocytes were purified from fresh blood samples obtained from 10 healthy adult volunteers (5 women and 5 men) after informed consent. The donors had normal blood cell counts, blood smears, hemoglobin electrophoresis, red cells membrane resistance tests and no biological evidence of hemolysis. Whole blood samples were centrifuged, the supernatant and the buffy coat containing white blood cells (WBC) and platelets were removed. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL6
1 Sample
Download data
Series
Accession:
GSE1866
ID:
200001866
13.

Transcriptome analysis reveals season-specific RbcS gene expression profiles in diploid Lolium perenne L.

(Submitter supplied) Perennial ryegrass (Lolium perenne L.) is a major grass species used for forage and turf throughout the world, and gains by conventional breeding have reached a plateau. Perennial ryegrass is an outcrossing, self-incompatible diploid (2n = 2x = 14) with a relatively large genome (4067 Mbp/diploid genome; Evans, G.M., Rees, H., Snell, C.L. and Sun, S. (1972). The relation between nuclear DNA amount and the duration of the mitotic cycle. more...
Organism:
Lolium perenne
Type:
Expression profiling by SAGE
Platform:
GPL3969
4 Samples
Download data
Series
Accession:
GSE5211
ID:
200005211
14.

Extraocular, masticatory, and hindlimb muscles, comparison of putative muscle allotypes (Porter lab)

(Submitter supplied) Extraocular Muscle is Defined by a Fundamentally Distinct Gene Expression Profile. Adult mouse extraocular, masticatory, and hindlimb (gastrocnemius/soleus) muscles of adult mice were compared using Affymetrix microarrays. Data form part of publication: Proceedings of the National Academy of Sciences USA 98:12062-12067, 2001. Keywords: parallel sample
Organism:
Mus musculus
Type:
Expression profiling by array
Dataset:
GDS702
Platform:
GPL32
14 Samples
Download data: CEL
Series
Accession:
GSE1062
ID:
200001062
15.
Full record GDS702

Extraocular, limb, and masticatory muscle comparison

Comparison of extraocular (EOM), masticatory (masseter), and hindlimb (gastrocnemius/soleus) muscle in 8 week old mice. EOM defined by distinct gene expression profile.
Organism:
Mus musculus
Type:
Expression profiling by array, count, 3 tissue sets
Platform:
GPL32
Series:
GSE1062
14 Samples
Download data: CEL
16.

SAGE libraries from mouse

(Submitter supplied) SAGE libraries from mouse
Organism:
Mus musculus
Type:
Expression profiling by SAGE
Platform:
GPL11
5 Samples
Download data
Series
Accession:
GSE25749
ID:
200025749
17.

Bombyx mori Posterior and Median Silk Gland SAGE transcriptome

(Submitter supplied) To identify functions that distinguish the posterior and median cells producing fibroin and sericin in the silk gland of Bombyx mori, serial analysis of gene expression (SAGE) profiles from both silk gland regions were analyzed and compared. The construction of a B. mori reference tag collection extracted from a set of 38000 Bombyx EST sequenced from the 3’ side, helped annotating the SAGE libraries. more...
Organism:
Bombyx mori
Type:
Expression profiling by SAGE
Platform:
GPL2095
2 Samples
Download data
Series
Accession:
GSE23098
ID:
200023098
18.

Serial analysis of gene expression in the corneal endothelium of Fuchs' dystrophy

(Submitter supplied) PURPOSE: To compare the gene expression profiles of normal human corneal endothelium with Fuchs' corneal endothelium, by using serial analysis of gene expression (SAGE). METHODS: Three pairs of normal human corneas were obtained from eye banks. Thirteen bisected Fuchs' corneal buttons were processed at the time of corneal transplantation. The endothelia of normal and Fuchs'-affected corneas were stripped, and total RNA was isolated. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL4
2 Samples
Download data
Series
Accession:
GSE505
ID:
200000505
19.

The pattern of gene expression in human CD34(+) stem/progenitor cells

(Submitter supplied) We have analyzed the pattern of gene expression in human primary CD34(+) stem/progenitor cells. We identified 42,399 unique serial analysis of gene expression (SAGE) tags among 106,021 SAGE tags collected from 2.5 x 10(6) CD34(+) cells purified from bone marrow. Of these unique SAGE tags, 21,546 matched known expressed sequences, including 3,687 known genes, and 20,854 were novel without a match. The SAGE tags that matched known sequences tended to be at higher levels, whereas the novel SAGE tags tended to be at lower levels. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL4
1 Sample
Download data
Series
Accession:
GSE2346
ID:
200002346
20.

The pattern of gene expression in human CD15+ myeloid progenitor cells

(Submitter supplied) We performed a genome-wide analysis of gene expression in primary human CD151 myeloid progenitor cells. By using the serial analysis of gene expression (SAGE) technique, we obtained quantitative information for the expression of 37,519 unique SAGE-tag sequences. Of these unique tags, (i) 25% were detected at high and intermediate levels, whereas 75% were present as single copies, (ii) 53% of the tags matched known expressed sequences, 34% of which were matched to more than one known expressed sequence, and (iii) 47% of the tags had no matches and represent potentially novel genes. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL4
1 Sample
Download data
Series
Accession:
GSE13007
ID:
200013007
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