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Links from GEO DataSets

Items: 19

1.

Normal_human_tissues

(Submitter supplied) Array hybridizations profiling diverse human tissues; for each array the human tissue RNA is hybridized against a universal reference RNA. Series_type: Logical set Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: other
Organism:
Homo sapiens
Type:
Expression profiling by array
Datasets:
GDS1085 GDS1088
5 related Platforms
123 Samples
Download data
Series
Accession:
GSE2193
ID:
200002193
2.

Normal_human_tissues_genomic_controls

(Submitter supplied) Array hybridizations profiling diverse human tissues; for each array the human tissue RNA is hybridized against a universal reference RNA. Experiments 1-3 are replicates of universal reference RNA vs. genomic DNA hybridizations, used to estimate transcript abundance. Arrays 4-8 are tissue RNA vs. genomic DNA hybridizations, carried out to evaluate the method for estimating transcript abundance (see manuscript for details). more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL1827
8 Samples
Download data
Series
Accession:
GSE2194
ID:
200002194
3.
Full record GDS1088

Normal tissues of diverse types (SHDP)

Expression profiling of 115 samples from 35 different types of normal tissues. Samples obtained by surgery or autopsy, and evaluated by pathologists. Results provide insight into the molecular organization of diverse cell types, and provide a baseline for comparison to diseased tissues.
Organism:
Homo sapiens
Type:
Expression profiling by array, log ratio, 4 tissue sets
Platform:
GPL1826
Series:
GSE2193
11 Samples
Download data
4.
Full record GDS1085

Normal tissues of diverse types (SHBW)

Expression profiling of 115 samples from 35 different types of normal tissues. Samples obtained by surgery or autopsy, and evaluated by pathologists. Results provide insight into the molecular organization of diverse cell types, and provide a baseline for comparison to diseased tissues.
Organism:
Homo sapiens
Type:
Expression profiling by array, log ratio, 20 tissue sets
Platform:
GPL1823
Series:
GSE2193
35 Samples
Download data
5.

cDNA microarray data of bovine placenta

(Submitter supplied) Gene expression patterns of bovine placenta from initial to late stage of pregnancy were investigated by using the our custom designed utero-placental cDNA microarray. Keywords: Time course
Organism:
Bos taurus
Type:
Expression profiling by array
Platform:
GPL1221
18 Samples
Download data
Series
Accession:
GSE7096
ID:
200007096
6.

Expression Changes Relevant for Apoptosis in K562 Cells Co-Treated with Amifostine and Imatinib

(Submitter supplied) We had previously demonstrated an increased proapoptotic effect of Imatinib (STI571) in combination with Amifostine (AMI) in K562 cell line. In this study we used genomic scale gene expression profiling to monitor changes at transcriptional level in K562 cells during the treatment with AMI+STI571. We identified a transcriptional repressor of survival genes, known as BTF, which triggers a pro-apoptotic signal, potentially helpful to overcome the resistance to STI571. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL2829
4 Samples
Download data
Series
Accession:
GSE3312
ID:
200003312
7.

Comparative study of gene expression in human colorectal cancer tissues and normal mucosa

(Submitter supplied) The purpose of our study was to better understand the genetic mechanism of oncogenesis for human colorectal cancer and to identify potential new tumour markers of use in clinical practice. Results: Comparing cancerous tissues with normal colonic mucosa we identified 584 known genes (3%) differentially expressed to a significant degree (p<0.001). Many of the transcripts that were more abundant in tumours than in non-neoplastic tissues appear to reflect important events for colon carcinogenesis. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL2829
24 Samples
Download data
Series
Accession:
GSE3294
ID:
200003294
8.

Expression Proflies of Human Normal tissues

(Submitter supplied) We performed expression profiling of 36 types of normal human tissues and identified 2,503 tissue-specific genes. We then systematically studied the expression of these genes in cancers by re-analyzing a large collection of published DNA microarray datasets. Our study shows that integration of each gene's breadth of expression (BOE) in normal tissues is important for biological interpretation of the expression profiles of cancers in terms of tumor differentiation, cell lineage and metastasis. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS1096
Platform:
GPL96
36 Samples
Download data: CEL, EXP
Series
Accession:
GSE2361
ID:
200002361
9.
Full record GDS1096

Normal tissues of various types

Expression profiling of 36 types of normal tissue. Each RNA tissue sample pooled from several donors. Results identify tissue specific genes and provide baselines for interpreting gene expression in cancer.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 36 tissue sets
Platform:
GPL96
Series:
GSE2361
36 Samples
Download data: CEL, EXP
DataSet
Accession:
GDS1096
ID:
1096
10.

Molecular phenotyping of human endometrium

(Submitter supplied) To examine the possibility that biochemical or molecular signatures of endometrium may prove to be more useful, we have investigated whole genome molecular phenotyping (54,600 genes/ESTs) of this tissue sampled across the cycle in 28 normo-ovulatory women, using high-density oligonucleotide microarrays. The results demonstrate that endometrial samples obtained by two different sampling techniques (biopsy and curetting hysterectomy specimens) from subjects who are as normal as possible in a human study and 4 including those with unknown histology, can be classified by their molecular signatures and correspond to known phases of the menstrual cycle with identical results using two independent analytical methods. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS2052
Platform:
GPL570
27 Samples
Download data: CEL
Series
Accession:
GSE4888
ID:
200004888
11.
Full record GDS2052

Endometrium throughout the menstrual cycle

Analysis of the normal endometrium at distinct phases of the menstrual cycle. Results provide insight into whether molecular profiles of the endometrium can distinguish the different phases of the menstrual cycle.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 5 other sets
Platform:
GPL570
Series:
GSE4888
27 Samples
Download data: CEL
DataSet
Accession:
GDS2052
ID:
2052
12.

Gene expression patterns in human liver cancers

(Submitter supplied) All the array experiments published in "Gene expression patterns in human liver cancers" by Chen X, et al. Hepatocellular carcinoma (HCC) is a leading cause of death worldwide. Using cDNA microarrays to characterize patterns of gene expression in HCC, we found consistent differences between the expression patterns in HCC compared with those seen in nontumor liver tissues. The expression patterns in HCC were also readily distinguished from those associated with tumors metastatic to liver. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
13 related Platforms
207 Samples
Download data
Series
Accession:
GSE3500
ID:
200003500
13.

Gene expression profiling of 19 cattle tissues reveals unique patterns related to tissue function

(Submitter supplied) cDNA microarrays have been shown to be useful for monitoring global gene expression patterns in normal and disease states and in response to various environmental stimuli. In this study we have used a cattle cDNA microarray containing 7653 elements to analyze expression profiles in 19 different cattle tissues. Signal intensities from all tissue sample RNAs were compared to a reference standard RNA created from different tissues and cell lines. more...
Organism:
Bos taurus
Type:
Expression profiling by array
Platform:
GPL2672
39 Samples
Download data
Series
Accession:
GSE3029
ID:
200003029
14.

Gene expression profile of Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP)

(Submitter supplied) Gene expression profile of Transgenic Adenocarcinoma of the Mouse Prostate (TRAMP) reveals murine targets for preclinical development of human prostate cancer therapy In this study, we have generated an open source TRAMP microarray dataset to identify differentially expressed genes from human prostate cancer that have concordant expression in TRAMP tumors, and thereby represent lead targets for preclinical therapy development. more...
Organism:
Mus musculus
Type:
Expression profiling by array
Platform:
GPL1261
18 Samples
Download data: CEL
Series
Accession:
GSE10525
ID:
200010525
15.

Mouse Immune system

(Submitter supplied) Groups of samples used in Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system profiles. Keywords: other
Organism:
Mus musculus
Type:
Expression profiling by array
Platform:
GPL1406
128 Samples
Download data
Series
Accession:
GSE2168
ID:
200002168
16.

Microarray gene expression profiling of 27k cDNAs in 23 healthy porcine tissues

(Submitter supplied) Background. Gene expression microarrays have been intensively applied to screen for genes involved in specific biological processes of interest such as diseases or responses to environmental stimuli. For mammalian species, cataloging of the global gene expression profiles in large tissue collections under normal conditions have been focusing on human and mouse genomes but is lacking for the pig genome. more...
Organism:
Sus scrofa
Type:
Expression profiling by array
Platform:
GPL3608
46 Samples
Download data
Series
Accession:
GSE4918
ID:
200004918
17.

Genome-Scale Identification of Membrane-Associated Human mRNAs

(Submitter supplied) The subcellular localization of proteins is critical to their biological roles. Moreover, whether a protein is membrane-bound, secreted, or intracellular affects the usefulness of, and the strategies for, using a protein as a diagnostic marker or a target for therapy. We employed a rapid and efficient experimental approach to classify thousands of human gene products as either membrane-associated/secreted (MS) or cytosolic/nuclear (CN). more...
Organism:
Homo sapiens
Type:
Expression profiling by array
5 related Platforms
19 Samples
Download data
Series
Accession:
GSE4175
ID:
200004175
18.

Comparison of gene expression profiles across the normal human body

(Submitter supplied) Normal human tissue samples from ten post-mortem donors were processed to generate total RNA, which was subsequently analyzed for gene expression using Affymetrix U133 plus 2.0 arrays. Donor information: Donor 1 - 25 year old male; donor 2 - 38 year old male; donor 3 - 39 year old female; donor 4 - 30 year old male; donor 5 - 35 year old male; donor 6 - 52 year old male; donor 7 - 50 year old female; donor 8 - 48 year old female; donor 9 - 53 year old female; donor 10 - 23 year old female Keywords: normal human tissue comparison
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL570
353 Samples
Download data: CEL
Series
Accession:
GSE3526
ID:
200003526
19.

Individuality and variation in gene expression patterns in human blood.

(Submitter supplied) We carried out a survey of the variation in gene expression patterns in the blood of healthy individuals, by using cDNA microarrays. Our results revealed a surprising consistency in these patterns, but also evidence of distinct patterns of interindividual and temporal variation. Some features of variation in the expression patterns were associated with differences in the cellular composition of the blood sample, with gender, age, and time of day. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platforms:
GPL3120 GPL3121 GPL3122
147 Samples
Download data
Series
Accession:
GSE3649
ID:
200003649
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