Format
Items per page
Sort by

Send to:

Choose Destination

Links from GEO DataSets

Items: 20

1.

Differential gene expression of Appresorium vs Vegetative mycelium of Magnaporthe using oligoarray

(Submitter supplied) Rice blast, caused by the fungal pathogen Magnaporthe grisea, is a devastating disease causing tremendous yield loss in rice production. The public availability of the complete genome sequence of M. grisea provides ample opportunities to understand the molecular mechanism of its pathogenesis on rice plants at the transcriptome level. To identify all the expressed genes encoded in the fungal genome, we have analyzed the mycelium and appressorium transcriptomes using MPSS, RL-SAGE and oligoarray methods. more...
Organism:
Pyricularia grisea
Type:
Expression profiling by array; Expression profiling by SAGE
Platforms:
GPL4080 GPL4085
2 Samples
Download data: TXT
Series
Accession:
GSE5518
ID:
200005518
2.

Oryza Sativa and Magnaporthe Grisea LongSAGE

(Submitter supplied) LongSAGE library in this series are from 'Whole Genome Analysis of Pathogen-Host Recognition and Subsequent Responses in the Rice Blast Patho-System' project. This work is supported by NSF-PGRP #0115642. Keywords: other
Organism:
Pyricularia oryzae 70-15; Oryza sativa Japonica Group
Type:
Expression profiling by SAGE
Platforms:
GPL1676 GPL775
5 Samples
Download data
Series
Accession:
GSE1924
ID:
200001924
3.

SAGE and MPSS libraries from activated CD4+ T cell clone 29

(Submitter supplied) SAGE and MPSS libraries were produced from the same RNA sample extracted from an activated CD4+ T cell clone in order to compare the ability of these techniques to indentify the full range of genes expressed in a single cell type. Keywords: Technical comparison of tag-based technologies SAGE and MPSS
Organism:
Homo sapiens
Type:
Expression profiling by SAGE; Expression profiling by MPSS
Platforms:
GPL5678 GPL5624
4 Samples
Download data: TXT
Series
Accession:
GSE8612
ID:
200008612
4.

SAGE tags generated from Triticum aestivum cultivars Scorpion 25 and Xi19 grown under normal and hot/dry conditions

(Submitter supplied) Triticum aestivum cultivars Scorpion 25 and Xi 19 were grown under both normal and hot/dry conditions. We compared the effect of these two growth conditions on these two closely related varieties.
Organism:
Triticum aestivum
Type:
Expression profiling by SAGE
Platform:
GPL7079
6 Samples
Download data
Series
Accession:
GSE12832
ID:
200012832
5.

Gene Expression in the Rice Blast Fungus, Magnaporthe grisea, During Nitrogen Starvation

(Submitter supplied) This experiment was designed to analyze transcriptional changes that occur when the fungal plant pathogen M. grisea is shifted from a complete media to a nitrogen-starved media. Comparisons were made in the following way between fungal mycelial grown in minimal media supplemented with a nitrogen source (MM+N) and minimal media without a nitrogen source (NS) Keywords: parallel sample
Organism:
Pyricularia grisea
Type:
Expression profiling by array
Platform:
GPL889
6 Samples
Download data
Series
Accession:
GSE2716
ID:
200002716
6.

5'-Serial Analysis of Gene Expression of the transcriptomes of Coprinopsis cinerea during fruiting body initiation

(Submitter supplied) Large scale assessment of the transcriptomes of the vegetative mycelium and primordium will facilitate the generation of a more comprehensive picture of the fruiting process in basidiomycetes. We coupled 5'-Serial Analysis of Gene Expression (5'-SAGE) to high-throughput pyrosequencing from 454 Life Sciences to analyze the transcriptomes and identify up-regulated genes (URGs) among vegetative mycelium (Myc) and stage 1 primordium (S1-Pri) of Coprinopsis cinerea during fruiting body development. more...
Organism:
Coprinopsis cinerea
Type:
Expression profiling by high throughput sequencing
Platform:
GPL16031
2 Samples
Download data: TXT
Series
Accession:
GSE40722
ID:
200040722
7.

Detecting novel low-abundant transcripts in Drosophila

(Submitter supplied) Increasing evidence suggests that low-abundant transcripts may play fundamental roles in biological processes. In an attempt to estimate the prevalence of low-abundant transcripts in eukaryotic genomes, we performed a transcriptome analysis in Drosophila using the SAGE technique. We collected 244,313 SAGE tags from transcripts expressed in Drosophila embryonic, larval, pupae, adult, and testicular tissue. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by SAGE
Platform:
GPL1882
5 Samples
Download data
Series
Accession:
GSE2347
ID:
200002347
8.

Comparison of transcript abundance in mycelium from the rice blast fungus Magnaporthe oryzae grown in rich medium and in minimal medium using RNA-Seq

(Submitter supplied) Mycelium from the rice blast fungus Magnaporthe oryzae was grown in both rich medium and under nutrient limiting conditions. Genes were identified that were more highly expressed in one condition as compared to the other.
Organism:
Pyricularia oryzae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13743
2 Samples
Download data: TXT
Series
Accession:
GSE30327
ID:
200030327
9.

Comparison of transcript abundance in mycelium from the rice blast fungus Magnaporthe oryzae grown in rich medium and in minimal medium using HT-SuperSAGE.

(Submitter supplied) Mycelium from the rice blast fungus Magnaporthe oryzae was grown in both rich medium and under nutrient limiting conditions. Genes were identified that were more highly expressed in one condition as compared to the other.
Organism:
Pyricularia oryzae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13743
6 Samples
Download data: TXT
Series
Accession:
GSE30256
ID:
200030256
10.

Analysis of transcript abundance during appressorium formation in the rice blast fungus Magnaporthe oryzae using HT-SuperSAGE.

(Submitter supplied) The rice-blast fungus Magnaporthe oryzae is disseminated using a three-celled spore or conidium. Upon landing on the surface of a rice leaf, the conidium germinates and forms a specialised structure for entry into the host plant - the appressorium. In this study we have followed gene expression thoughout germination of the conidium and formation of the appressorium to identify genes that may be important for appressorium function. more...
Organism:
Pyricularia oryzae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13743
12 Samples
Download data: TXT
Series
Accession:
GSE30069
ID:
200030069
11.

SAGE analysis of A. thaliana leaf tissue

(Submitter supplied) Arabidopsis thaliana (Col-4) aerial tissue collected from 14-day old plants. Grown under sterile conditions at 22 degrees Celsius and 125 uE light on 0.5xMS media.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by SAGE
Platform:
GPL25
1 Sample
Download data
Series
Accession:
GSE25993
ID:
200025993
12.

LongSAGE transcriptome profiling in the widespread marine coccolithophore Emiliania huxleyi

(Submitter supplied) The abundant and widespread coccolithophore Emiliania huxleyi plays an important role in mediating CO2 exchange between the ocean and the atmosphere through its impact on marine photosynthesis and calcification. Here, we use long serial analysis of gene expression (SAGE) to identify E. huxleyi genes responsive to nitrogen (N) or phosphorus (P) starvation. Long SAGE is an elegant approach for examining quantitative and comprehensive gene expression patterns without a priori knowledge of gene sequences via the detection of 21-bp nucleotide sequence tags. more...
Organism:
Emiliania huxleyi CCMP1516
Type:
Expression profiling by SAGE
Platform:
GPL5469
3 Samples
Download data
Series
Accession:
GSE8376
ID:
200008376
13.

RL-SAGE analysis of Zea mays leaf transcriptome

(Submitter supplied) Using the RL-SAGE method (Gowda et al. 2004), a maize leaf longSAGE library (cv. inbred line B73) was constructed. Leaf tissues were harvested from 4-week old B73 plants for RNA isolation. The conditions in the growth chamber were 12 h light (500 µmol photons m-2 sec-1), 20oC at night, 26oC in the day and 85% relative humidity. A total of 44,870 unique tags (17 bases +CATG) were identified from 232,948 individual tags in the maize leaf library.
Organism:
Zea mays
Type:
Expression profiling by SAGE
Platform:
GPL1462
1 Sample
Download data
Series
Accession:
GSE25994
ID:
200025994
14.

Wheat "Chinese Spring" natural antisense transcription survey

(Submitter supplied) The Affymetrix GeneChip Wheat Genome Array currently provides the most comprehensive coverage of the wheat genome for a microarray. In addition to using this resource for transcript expression studies and hybridization-based DNA marker discovery, we endeavored to use the GeneChip to discover the expression of natural antisense transcript (NAT) pairs. By using alternative target preparation schemes, both the sense- and antisense-strand derived transcripts were labeled and hybridized to the Wheat GeneChip. more...
Organism:
Triticum aestivum
Type:
Expression profiling by array
Platform:
GPL3802
2 Samples
Download data: CEL
Series
Accession:
GSE12528
ID:
200012528
15.

Serial analysis of gene expression in the corneal endothelium of Fuchs' dystrophy

(Submitter supplied) PURPOSE: To compare the gene expression profiles of normal human corneal endothelium with Fuchs' corneal endothelium, by using serial analysis of gene expression (SAGE). METHODS: Three pairs of normal human corneas were obtained from eye banks. Thirteen bisected Fuchs' corneal buttons were processed at the time of corneal transplantation. The endothelia of normal and Fuchs'-affected corneas were stripped, and total RNA was isolated. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL4
2 Samples
Download data
Series
Accession:
GSE505
ID:
200000505
16.

Mus musculus hematopoietic stem cell

(Submitter supplied) A transcriptome study in mouse hematopoietic stem cells was performed using a sensitive SAGE method, in an attempt to detect medium and low abundant transcripts expressed in these cells. Among a total of 31,380 unique transcript, 17,326 (55%) known genes were detected, 14,054 (45%) low-copy transcripts that have no matches to currently known genes. 3,899 (23%) were alternatively spliced transcripts of the known genes and 3,754 (22%) represent anti-sense transcripts from known genes.
Organism:
Mus musculus
Type:
Expression profiling by SAGE
Platform:
GPL11
1 Sample
Download data
Series
Accession:
GSE16139
ID:
200016139
17.

Zebrafish ovarian follicle transcriptome

(Submitter supplied) SAGE analysis of fully grown ovarian follicles has been carried out to supply a resource for identification of important molecules involved in vertebrate oogenesis and in early stages of embryonic development. Keywords: SAGE
Organism:
Danio rerio
Type:
Expression profiling by SAGE
Platform:
GPL3209
1 Sample
Download data
Series
Accession:
GSE3679
ID:
200003679
18.

Genome-wide Identification and Characterization of Natural Antisense Transcripts by Strand-specific RNA Sequencing in Ganoderma lucidum

(Submitter supplied) We have identified and characterized the natural antisense transcripts using strand-specific (ss) RNA-seq technology.
Organism:
Ganoderma lucidum G.260125-1
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL23072
3 Samples
Download data: TXT
Series
Accession:
GSE94910
ID:
200094910
19.

Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line

(Submitter supplied) These libraries represent total RNA from bursal tissue of 20 day old CB-inbred chicks and the ALV induced bursal cell line DT40 Cre1 cells. Keywords = chicken transcriptome SAGE Bursal cell DT40 Keywords: other
Organism:
Gallus gallus
Type:
Expression profiling by SAGE
Platform:
GPL1477
2 Samples
Download data
Series
Accession:
GSE1817
ID:
200001817
20.

Adult mouse testis

(Submitter supplied) SAGE libraries generated from total testes of adult mouse males. Keywords = testis Keywords: other
Organism:
Mus musculus
Type:
Expression profiling by SAGE
Platform:
GPL11
2 Samples
Download data
Series
Accession:
GSE1939
ID:
200001939
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=|query=1|qty=16|blobid=MCID_61086ff69650851b63512e95|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center