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Links from GEO DataSets

Items: 19

1.

Bombyx mori Posterior and Median Silk Gland SAGE transcriptome

(Submitter supplied) To identify functions that distinguish the posterior and median cells producing fibroin and sericin in the silk gland of Bombyx mori, serial analysis of gene expression (SAGE) profiles from both silk gland regions were analyzed and compared. The construction of a B. mori reference tag collection extracted from a set of 38000 Bombyx EST sequenced from the 3’ side, helped annotating the SAGE libraries. more...
Organism:
Bombyx mori
Type:
Expression profiling by SAGE
Platform:
GPL2095
2 Samples
Download data
Series
Accession:
GSE23098
ID:
200023098
2.

Radiation-induced changes in gene expression in the silkworm revealed by serial analysis of gene expression

(Submitter supplied) These results provide valuable information for understanding the mechanisms of radiation-induced changes in gene expression.
Organism:
Bombyx mori
Type:
Expression profiling by SAGE
Platform:
GPL2095
2 Samples
Download data
Series
Accession:
GSE2689
ID:
200002689
3.

Expression data from silkworm posterior silk glands at the late larval stages

(Submitter supplied) The silkworm silk gland is one of the most efficient protein synthesis systems among all organisms. Its amazingly efficient protein synthesis makes the silk gland a desirable object for basic studies on gene expression and regulation and for biotechnological applications. At the early stages of the fifth (final) instar, the cellular structures necessary for the synthesis of fibroin are rapidly formed, and at the later stage the synthesis of fibroin proceeds at a maximum rate. more...
Organism:
Bombyx mori
Type:
Expression profiling by array
Platform:
GPL10763
15 Samples
Download data: LSR
Series
Accession:
GSE26172
ID:
200026172
4.

SAGE libraries derived from Bombyx ovaries

(Submitter supplied) These two 3' Long SAGE libraries were constructed from stage 1-3 or stage 2-3 Bombyx egg chambers. Keywords: 3' Long SAGE libraries
Organism:
Bombyx mori
Type:
Expression profiling by SAGE
Platform:
GPL3984
2 Samples
Download data
Series
Accession:
GSE5830
ID:
200005830
5.

MicroRNAs of Bombyx mori identified by Solexa sequencing

(Submitter supplied) Background: MicroRNA (miRNA) and other small regulatory RNAs contribute to the modulation of a large number of cellular processes. We sequenced three total RNA libraries prepared from the whole body, and the anterior and posterior silk glands of Bombyx mori, with a view to expanding the repertoire of silkworm miRNAs and exploring transcriptional differences in miRNAs between segments of the silk gland. more...
Organism:
Bombyx mori
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL9151
3 Samples
Download data: FA, PNG, TXT
Series
Accession:
GSE17965
ID:
200017965
6.

Extraocular muscle, expression changes in critical period (Porter lab)

(Submitter supplied) Evaluation of extraocular muscle (EOM) critical period by expression profiling in dark reared rat. Data form part of publication: Investigative Ophthalmology and Visual Sciences 44: 3842-3855, 2003. Keywords: other
Organism:
Rattus norvegicus
Type:
Expression profiling by SAGE
Platform:
GPL23
2 Samples
Download data
Series
Accession:
GSE497
ID:
200000497
7.

MicroRNA expression profiling of the fifth-instar posterior silk gland of Bombyx mori

(Submitter supplied) Background: The growth and development of the posterior silk gland and the biosynthesis of the silk core protein at the fifth larval instar stage of Bombyx mori are of paramount importance for silk production. Results: Here, aided by next-generation sequencing and microarry assay, we profile 1,229 microRNAs (miRNAs), including 728 novel miRNAs and 110 miRNA/miRNA* duplexes, from the posterior silk gland at the fifth larval instar. more...
Organism:
Bombyx mori
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL15780
10 Samples
Download data: FA, PNG, TXT
Series
Accession:
GSE56380
ID:
200056380
8.

Comparative molecular analysis of developing mouse forelimbs and hindlimbs

(Submitter supplied) The analysis of differentially expressed genes is a powerful approach to elucidate the genetic mechanisms underlying the morphological and evolutionary diversity among serially homologous structures, both within the same organism (e.g., hand vs. foot) and between different species (e.g., hand vs. wing). In the developing embryo, limb-specific expression of Pitx1, Tbx4, and Tbx5 regulates the determination of limb identity. more...
Organism:
Mus musculus
Type:
Expression profiling by SAGE
Platform:
GPL11
2 Samples
Download data
Series
Accession:
GSE504
ID:
200000504
9.

A SAGE approach to discovery of apolipoprotein E4 allele-specific genes involved in increased risk in Alzheimer disease

(Submitter supplied) APOE4 allele is a major risk factor for late-onset Alzheimer disease (AD). The mechanism of action of APOE in AD remains unclear. To study the effects of APOE alleles on gene expression in AD, we have analyzed the gene transcription patterns of human hippocampus from APOE3/3, APOE3/4, APOE4/4 AD patients and normal control using Serial Analysis of Gene Expression (SAGE). Using SAGE, we found gene expression patterns in hippocampus of APOE3/4 and APOE4/4 AD patients differ substantially from those of APOE3/3 AD patients. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platforms:
GPL4 GPL1485
6 Samples
Download data
Series
Accession:
GSE6677
ID:
200006677
10.

SAGE analysis of normal human thyroid tissue

(Submitter supplied) This library was generated from normal human thyroid tissue collected at routine autopsy. Standard SAGE protocol was used (Velculescu et al. Science 1995). Data from this library was published in: 'Pauws E, Moreno JC, Tijssen M, Baas F, de Vijlder JJ, Ris-Stalpers C. J Clin Endocrinol Metab. 2000 May;85(5):1923-7' Data was generated and analyzed at the laboratory of Pediatric Endocrinology, Academic Medial Center, Amsterdam, The Netherlands.
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL4
1 Sample
Download data
Series
Accession:
GSE25754
ID:
200025754
11.

SAGE analysis of A. thaliana leaf tissue

(Submitter supplied) Arabidopsis thaliana (Col-4) aerial tissue collected from 14-day old plants. Grown under sterile conditions at 22 degrees Celsius and 125 uE light on 0.5xMS media.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by SAGE
Platform:
GPL25
1 Sample
Download data
Series
Accession:
GSE25993
ID:
200025993
12.

The pattern of gene expression in human CD34(+) stem/progenitor cells

(Submitter supplied) We have analyzed the pattern of gene expression in human primary CD34(+) stem/progenitor cells. We identified 42,399 unique serial analysis of gene expression (SAGE) tags among 106,021 SAGE tags collected from 2.5 x 10(6) CD34(+) cells purified from bone marrow. Of these unique SAGE tags, 21,546 matched known expressed sequences, including 3,687 known genes, and 20,854 were novel without a match. The SAGE tags that matched known sequences tended to be at higher levels, whereas the novel SAGE tags tended to be at lower levels. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL4
1 Sample
Download data
Series
Accession:
GSE2346
ID:
200002346
13.

LongSAGE transcriptome profiling in the widespread marine coccolithophore Emiliania huxleyi

(Submitter supplied) The abundant and widespread coccolithophore Emiliania huxleyi plays an important role in mediating CO2 exchange between the ocean and the atmosphere through its impact on marine photosynthesis and calcification. Here, we use long serial analysis of gene expression (SAGE) to identify E. huxleyi genes responsive to nitrogen (N) or phosphorus (P) starvation. Long SAGE is an elegant approach for examining quantitative and comprehensive gene expression patterns without a priori knowledge of gene sequences via the detection of 21-bp nucleotide sequence tags. more...
Organism:
Emiliania huxleyi CCMP1516
Type:
Expression profiling by SAGE
Platform:
GPL5469
3 Samples
Download data
Series
Accession:
GSE8376
ID:
200008376
14.

Serial analysis of gene expression in the corneal endothelium of Fuchs' dystrophy

(Submitter supplied) PURPOSE: To compare the gene expression profiles of normal human corneal endothelium with Fuchs' corneal endothelium, by using serial analysis of gene expression (SAGE). METHODS: Three pairs of normal human corneas were obtained from eye banks. Thirteen bisected Fuchs' corneal buttons were processed at the time of corneal transplantation. The endothelia of normal and Fuchs'-affected corneas were stripped, and total RNA was isolated. more...
Organism:
Homo sapiens
Type:
Expression profiling by SAGE
Platform:
GPL4
2 Samples
Download data
Series
Accession:
GSE505
ID:
200000505
15.

Detecting novel low-abundant transcripts in Drosophila

(Submitter supplied) Increasing evidence suggests that low-abundant transcripts may play fundamental roles in biological processes. In an attempt to estimate the prevalence of low-abundant transcripts in eukaryotic genomes, we performed a transcriptome analysis in Drosophila using the SAGE technique. We collected 244,313 SAGE tags from transcripts expressed in Drosophila embryonic, larval, pupae, adult, and testicular tissue. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by SAGE
Platform:
GPL1882
5 Samples
Download data
Series
Accession:
GSE2347
ID:
200002347
16.

Bovine Glomerular and Aortic Endothelial Cells

(Submitter supplied) SAGE libraries were prepared from mRNA of cultured bovine glomerular and aortic endothelial cells. Cells both cell lines were positive for acetylated LDL uptake and vWF expression, and were proven to be free of non-endothelial cells. Cultures were studied at passage 9-10. The cells were confluent, cultured in parallel, under identical conditions. Cells were plated on gelatin coated cell culture plastic in RPMI 1640 medium containing 10% FBS and streptomycin/penicillin. more...
Organism:
Bos taurus
Type:
Expression profiling by SAGE
Platform:
GPL223
2 Samples
Download data
Series
Accession:
GSE110
ID:
200000110
17.

Mus musculus cornea experiment

(Submitter supplied) PURPOSE: To provide a detailed gene expression profile of the normal postnatal mouse cornea. METHODS: Serial analysis of gene expression (SAGE) was performed on postnatal day (PN)9 and adult mouse (6 week) total corneas. The expression of selected genes was analyzed by in situ hybridization. RESULTS: A total of 64,272 PN9 and 62,206 adult tags were sequenced. Mouse corneal transcriptomes are composed of at least 19,544 and 18,509 unique mRNAs, respectively. more...
Organism:
Mus musculus
Type:
Expression profiling by SAGE
Platform:
GPL11
2 Samples
Download data
Series
Accession:
GSE887
ID:
200000887
18.

SAGE libraries from mouse

(Submitter supplied) SAGE libraries from mouse
Organism:
Mus musculus
Type:
Expression profiling by SAGE
Platform:
GPL11
5 Samples
Download data
Series
Accession:
GSE25749
ID:
200025749
19.

Sexually dimorphic gene expression in the hypothalamus, pituitary gland and cortex by SAGE

(Submitter supplied) C57BL6 mice (12-15 weeks old) were obtained from Charles River Laboratories (St. Constant, Québec). They were housed in an air-conditioned room (19-25Åé) with controlled lighting from 07:15 to 19:15 h and were given free access to laboratory chow (Lab Rodent Diet No. 5002, Ren’s Feed and Suppliers, Ontario) and water. The hypothalamus, pituitary gland and parietal cortex of 51 male and 51 randomly estrous cycling female mice were pooled and used for expression profiling. more...
Organism:
Mus musculus
Type:
Expression profiling by SAGE
Platform:
GPL11
6 Samples
Download data
Series
Accession:
GSE2156
ID:
200002156
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