Similar studies for GEO DataSets (Select 200052792) - GEO DataSets

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Items: 20

Select item 2000527921.

mRNA expression in RNase deletion mutants of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of RNase deletion strains of Thermus thermophils HB8. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
81 Samples

Download data: CEL

Series

Accession:: GSE52792

ID:: 200052792

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000388972.

Bacillus subtilis Rnase Y activity in vivo analysed by tiling microarrays

(Submitter supplied) RNase Y is an essential endoribonuclease affecting global mRNA stability in Bacillus subtilis. We used high-resolution tiling arrays to analyze the effect of RNase Y depletion on RNA abundance covering the entire genome. The data confirm that this endoribonuclease plays a key role in initiating the decay of a large number of mRNAs as well as non coding RNAs. Comparison of the data with that of two other recent studies revealed very significant differences. more...

Organism:: Bacillus subtilis subsp. subtilis str. 168

Type:: Expression profiling by genome tiling array

Platform:: GPL15736
4 Samples

Download data: PAIR

Series

Accession:: GSE38897

ID:: 200038897

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000953183.

RNA-sequencing identifies new RNase III cleavage sites in E. coli and reveals increased regulation of mRNA

(Submitter supplied) In this study, we performed RNA-sequencing on an E. coli model system to confirm known sites, identify novel targets, and determine the impact of RNase III cleavage events on transcript degradation and metabolic phenotypes. To find cleavage sites, we compared the abundance of sequencing reads across the transcriptome of a wild-type E. coli and an rnc- deletion mutant. The RNA-sequencing approach provided wider coverage and unprecedented resolution of mRNA abundance at each position in the transcriptome compared to prior studies that used qPCR, Northern blots, or microarrays. more...

Organism:: Escherichia coli

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18133
15 Samples

Download data: TXT

Series

Accession:: GSE95318

ID:: 200095318

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000218754.

SuperSeries for the study of expression pattern analysis of Thermus thermophilus HB8

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
306 Samples

Download data: CEL

Series

Accession:: GSE21875

ID:: 200021875

Select item 2000216175.

Expression profile of TTHA0167-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA0167 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHA0167-deficient strain grown in a rich medium at 70°C for 480 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE21617

ID:: 200021617

Select item 2000214746.

Time course of the mRNA expression after phage ϕYS40 infection in crp deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA in crp (TTHA1437) deletion mutant strain of Thermus thermophilus HB8 during infection of bacteriophage ϕYS40.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
9 Samples

Download data: CEL

Series

Accession:: GSE21474

ID:: 200021474

Select item 2000214737.

Time course of the mRNA expression in wild-type Thermus thermophilus HB8 strain grown in a rich medium (labeling:ENZO)

(Submitter supplied) In order to observe altered expression profile of wild-type T. thermophilus HB8 strain grown in a rich (TT) medium at 70°C. we analyzed time-dependent mRNA expression profile of the total mRNA from the strain, which corresponds the logarithmic phase to the early stationary phase.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
16 Samples

Download data: CEL

Series

Accession:: GSE21473

ID:: 200021473

Select item 2000214728.

Expression profile of TTHA1359-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA1359 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the sdrP-deficient strain grown in a rich medium at 70°C for 300, 480, and 600 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
10 Samples

Download data: CEL

Series

Accession:: GSE21472

ID:: 200021472

Select item 2000214719.

Expression profile of TTHA0175-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA0175 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHA0175-deficient strain grown in a rich medium at 70°C for 300, 480, and 600 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
6 Samples

Download data: CEL

Series

Accession:: GSE21471

ID:: 200021471

Select item 20002147010.

Differential expression analysis of T. thermophilus HB8 TTHA0995-deficient strain in response to iron

(Submitter supplied) We observed the expression profile of the total mRNA in Thermus thermophilus HB8 TTHA0995 deficient strain at 0 and 30 min after the addition of FeSO4.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
6 Samples

Download data: CEL

Series

Accession:: GSE21470

ID:: 200021470

Select item 20002146611.

T. thermophilus HB8 wild-type strain in response to iron (2008)

(Submitter supplied) We observed the expression profile of the total mRNA in Thermus thermophilus HB8 wild-type strain at 30 min after the addition of FeSO4.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE21466

ID:: 200021466

Select item 20002146412.

Expression profile of TTHA1939-deficient Thermus thermophilus HB8 strain

(Submitter supplied) We observed the expression profile of the total mRNA of the TTHA1939-deficient strain grown in a rich medium at 70°C for 800 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
4 Samples

Download data: CEL

Series

Accession:: GSE21464

ID:: 200021464

Select item 20002146213.

Expression profile of TTHA1431-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA1431 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHA1431-deficient strain grown in a rich medium at 70°C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE21462

ID:: 200021462

Select item 20002146114.

Expression profile of TTHA0845-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA0845 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHA0845-deficient strain grown in a rich medium at 70°C for 420 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE21461

ID:: 200021461

Select item 20002146015.

Expression profile of TTHA1634-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA1634 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHA1634-deficient strain grown in a rich medium at 70°C for 420, and 600 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
4 Samples

Download data: CEL

Series

Accession:: GSE21460

ID:: 200021460

Select item 20002145916.

Expression profile of crp-deficient Thermus thermophilus HB8 strain

(Submitter supplied) We observed the expression profile of the total mRNA of crp (TTHA1437) deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70 degC

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
6 Samples

Download data: CEL

Series

Accession:: GSE21459

ID:: 200021459

Select item 20002145717.

Expression profile of TTHB186-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHB186 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHB186-deficient strain grown in a rich medium at 70°C for 360, and 480 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
6 Samples

Download data: CEL

Series

Accession:: GSE21457

ID:: 200021457

Select item 20002145618.

Expression profile of TTHA0252-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA0252 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHA0252-deficient strain grown in a rich medium at 70°C for 360,540, and 680 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
6 Samples

Download data: CEL

Series

Accession:: GSE21456

ID:: 200021456

Select item 20002145319.

Expression profile of TTHA0101-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of TTHA0101 protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the TTHA0101-deficient strain grown in a rich medium at 70°C for 680 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE21453

ID:: 200021453

Select item 20002143620.

T. thermophilus HB8 alternative sigma factor sigE (TTHB211) deletion mutant strain, TT medium, 8 h

(Submitter supplied) We observed the expression profile of the total mRNA of sigE (TTHB211) deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70 degC.