Similar studies for GEO DataSets (Select 200106077) - GEO DataSets

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Items: 3

Select item 2001060771.

A quantitative model for characterizing the evolutionary history of mammalian gene expression

(Submitter supplied) Characterizing the evolutionary history of a gene’s expression profile is a critical component for understanding the relationship between genotype, expression, and phenotype. However, it is not well-established how best to distinguish the different evolutionary forces acting on gene expression. Here, we use RNA-seq across 7 tissues from 17 mammalian species to show that expression evolution across mammals is accurately modeled by the Ornstein-Uhlenbeck (OU) process. more...

Organism:: Dasypus novemcinctus; Canis lupus familiaris; Mustela putorius furo; Oryctolagus cuniculus; Monodelphis domestica

Type:: Expression profiling by high throughput sequencing

5 related Platforms
33 Samples

Download data: TXT

Series

Accession:: GSE106077

ID:: 200106077

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000597062.

Identification of lineage-specific cis-regulatory modules associated with variation in transcription factor binding and chromatin activity using Ornstein-Uhlenbeck models

(Submitter supplied) Whole-chromatin profile (FAIRE-seq) in three Drosophila species (D. melanogaster, D. pseudoobscura and D. virilis) in eye-antennal imaginal discs at the stage of third instar wandering larvae.

Organism:: Drosophila melanogaster; Drosophila pseudoobscura; Drosophila virilis

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL13313 GPL13304 GPL13310
4 Samples

Download data: BW, TXT

Series

Accession:: GSE59706

ID:: 200059706

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000388753.

Expression evolution in gene groups: Inferring non-neutral regulatory change in pathways from transcriptional profiling data

(Submitter supplied) We profiled the transcriptomes of four Saccharomyces species, as well as pairwise hybrids between three of the species with S. cerevisiae

Organism:: Saccharomyces mikatae; Saccharomyces cerevisiae x Saccharomyces bayanus; Saccharomyces paradoxus; Saccharomyces cerevisiae x Saccharomyces paradoxus; Saccharomyces bayanus; Saccharomyces cerevisiae; Saccharomyces cerevisiae x Saccharomyces mikatae