GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Branchiostoma lanceolatum; Xenopus tropicalis; Ptychodera flava; Danio rerio

Type:

Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

4 related Platforms

75 Samples

Download data: TSV, TXT

(Submitter supplied) Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation [Pires-daSilva & Sommer, Nat. Rev. Genet. 4, 39-49 (2003)]. Remarkably, in contrast to the large number of transcription factors present in animal genomes, only a few of these pathways operate during development [Sanz-Ezquerro, Münsterberg & Stricker, Front. more...

Organism:

Xenopus tropicalis; Ptychodera flava

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL31011 GPL31012

18 Samples

Download data: TSV

(Submitter supplied) Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation. Remarkably, in contrast to the large number of transcription factors present in animal genomes, only a few of these pathways operate during development. Moreover, most of them are largely conserved along metazoan evolution. How evolution has generated a vast diversity of animal morphologies with such a limited number of tools is still largely unknown. more...

Organism:

Branchiostoma lanceolatum; Danio rerio

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL21741 GPL24210

33 Samples

Download data: TXT

(Submitter supplied) Signaling pathways control a large number of gene regulatory networks (GRNs) during animal development, acting as major tools for body plan formation. Remarkably, in contrast to the large number of transcription factors present in animal genomes, only a few of these pathways operate during development. Moreover, most of them are largely conserved along metazoan evolution. How evolution has generated a vast diversity of animal morphologies with such a limited number of tools is still largely unknown. more...

Organism:

Branchiostoma lanceolatum; Danio rerio

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL24210 GPL21741

24 Samples

Download data: BED

(Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more...

Organism:

Danio rerio

Type:

Other

Platform:

GPL14875

83 Samples

Download data: BEDGRAPH

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Branchiostoma lanceolatum; Danio rerio; Oryzias latipes

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

7 related Platforms

217 Samples

Download data: BED, BEDGRAPH, TXT

(Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more...

Organism:

Branchiostoma lanceolatum; Danio rerio; Oryzias latipes

Type:

Expression profiling by high throughput sequencing

4 related Platforms

81 Samples

Download data: TXT

(Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more...

Organism:

Branchiostoma lanceolatum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24206

7 Samples

Download data: BEDGRAPH

(Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more...

Organism:

Danio rerio; Branchiostoma lanceolatum; Oryzias latipes

Type:

Genome binding/occupancy profiling by high throughput sequencing

4 related Platforms

29 Samples

Download data: BED

(Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more...

Organism:

Branchiostoma lanceolatum

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL24206

17 Samples

Download data: BED

(Submitter supplied) To be able to fully comprehend the contribution of the epigenome to embryonic development, it is important to understand how various components of the epigenome evolved. To date, a number of studies have thoroughly described various epigenetic mechanisms in both vertebrates and invertebrates, however there is currently a lack of high resolution epigenomic data corresponding to animals that form the invertebrate-vertebrate boundary. more...

Organism:

Branchiostoma lanceolatum

Type:

Methylation profiling by high throughput sequencing

Platforms:

GPL23852 GPL25186

10 Samples

Download data: TSV, TXT

(Submitter supplied) Comparison among vertebrates and the cephalochordate amphioxus Hox clusters architectures

Organism:

Danio rerio; Branchiostoma lanceolatum

Type:

Other; Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL14875 GPL20177

74 Samples

Download data: BEDGRAPH, BW, FA

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Branchiostoma lanceolatum

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL24210

16 Samples

Download data

(Submitter supplied) The goal of this projet was to identify genes differentially expressed between control and Activin-treated explants at two time points (gastrula and neurula stage)

Organism:

Branchiostoma lanceolatum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24210

8 Samples

Download data: TSV

(Submitter supplied) The goal of this projet was to identify genomic region showing differential accessibility between control and Activin-treated amphioxus explants at two time points (gastrula and neurula stage)

Organism:

Branchiostoma lanceolatum

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL24210

8 Samples

Download data: BED

(Submitter supplied) miRNA profiling of zebrafish embryos comparing control MO with Lin28A MO or Lin28B MO injected embryos at 5hpf

Organism:

Danio rerio

Type:

Non-coding RNA profiling by array

Platform:

GPL17951

3 Samples

Download data: TXT

(Submitter supplied) We compared the transcriptomes of Amphioxus (Branchiostoma lanceolatum) control and SU5402 treated embryos to define putative FGF signalling pathway target genes during somitogenesis. Embryos were treated with 50µM of SU5402 from 5.5hpf to 8.5hpf, 11.5hpf, and 14.5hpf or from 15hpf to 18hpf, 21hpf, 24hpf. Total RNA was extracted from control and treated embryos.

Organism:

Branchiostoma lanceolatum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25775 GPL20177

24 Samples

Download data: FASTA, TXT

(Submitter supplied) Using chromatin immunoprecipitation combined with microarrays we have identified targets of No tail (Ntl), a zebrafish Brachyury ortholog that plays a central role in mesoderm formation. We show that Ntl regulates a downstream network of other transcription factors and identify an in vivo Ntl binding site that resembles the consensus T-box binding site (TBS) previously identified by in vitro studies. more...

Organism:

Danio rerio

Type:

Genome binding/occupancy profiling by genome tiling array

9 related Platforms

27 Samples

Download data: GPR