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Links from GEO DataSets

Items: 7

1.
Full record GDS2534

p63 depletion effect

Analysis of ME180 cervical carcinoma cells depleted for p63 isoforms by expression of a small hairpin RNA targeting the p63 oligomerization domain. p63 is a p53 homolog essential for stratified epithelial development. Results provide insight into the function of p63 in transcriptional regulation.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 protocol sets
Platform:
GPL570
Series:
GSE5993
6 Samples
Download data: CEL
DataSet
Accession:
GDS2534
ID:
2534
2.

Whole genome mapping of p63 binding sites in ME180 human cervical carcinoma cells

(Submitter supplied) Using tiled microarrays covering the entire human genome, we identify ~5800 target sites for p63, a homolog of the p53 tumor suppressor essential for stratified epithelial development and implicated in epithelial stem cell maintenance. Keywords: ChIP-chip
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by genome tiling array
14 related Platforms
84 Samples
Download data: CEL
Series
Accession:
GSE6132
ID:
200006132
3.

mRNA expression profiling of p63-depleted versus wildtype ME180 cells

(Submitter supplied) We investigated the transcriptional effects of p63 binding by analyzing ME180 cells depleted for all p63 isoforms via expression of a small hairpin RNA (shRNA) targeting the p63 oligomerization domain. Keywords: differential expression profiling from transcription factor depletion
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS2534
Platform:
GPL570
6 Samples
Download data: CEL
Series
Accession:
GSE5993
ID:
200005993
4.

Whole genome mapping of p73 binding sites in ME180 human cervical carcinoma cells

(Submitter supplied) Using chromatin immunoprecipitation and high-resolution tiling arrays covering the human genome, we render a genome-wide map of p73 DNA binding sites in ME180 human cervical carcinoma cells.
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by genome tiling array
7 related Platforms
7 Samples
Download data: BAR, CEL, TXT, XLS
Series
Accession:
GSE18650
ID:
200018650
5.

Evolutionary re-wiring of p63 regulatory landscape has both epigenetic and transcriptomic implications and is the underlying cause for epidermal differences between mouse and human

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17021
14 Samples
Download data
Series
Accession:
GSE86902
ID:
200086902
6.

Evolutionary re-wiring of p63 regulatory landscape has both epigenetic and transcriptomic implications and is the underlying cause for epidermal differences between mouse and human [RNA-seq]

(Submitter supplied) Gene expression analysis of two different mouse keratinocytes using RNA-Seq
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17021
4 Samples
Download data: TXT
Series
Accession:
GSE86901
ID:
200086901
7.

Evolutionary re-wiring of p63 regulatory landscape has both epigenetic and transcriptomic implications and is the underlying cause for epidermal differences between mouse and human [ChIP-seq]

(Submitter supplied) Mapping p63 regulatory and epigenetic landscape in mouse keratinocytes using ChIP-Seq techniques
Organism:
Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17021
10 Samples
Download data: BED, BIGWIG
Series
Accession:
GSE86900
ID:
200086900
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Supplemental Content

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