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Links from GEO DataSets

Items: 11

1.
Full record GDS4392

Hepatitis C virus permissive cell lines Huh7.5 and HRP1 and non-permissive parent cell line Huh7

Analysis of hepatocyte cell line Huh7, non-permissive to hepatitis C virus (HCV) replication, and permissive cell lines Huh7.5 and HRP1. Results provide insight into host factors lost in cells permissive for HCV replication.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 3 cell line, 2 genotype/variation sets
Platform:
GPL570
Series:
GSE25156
4 Samples
Download data: CEL, CHP
2.

CREB3L1 Target Genes in Response to Hepatitis C Replicon Infection

(Submitter supplied) Membrane-bound transcription factor CREB3L1 undergoes Regulated Intramembrane Proteolysis (RIP) in response to Hepatitis C infection. RIP activates CREB3L1 so that it can prevent the growth of HCV infected cells through the action of downstream genes. We over-expressed a truncated form of CREB3L1 that does not require RIP to enter the nucleus. Cells over-expressing this truncated form were isolated by Fluorescence Activated Cell Sorting (FACS). more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL570
2 Samples
Download data: CEL, CHP
Series
Accession:
GSE25157
ID:
200025157
3.

Host Factors with Reduced Expression in Two HCV Permissive Cell Lines as Compared to the Non-Permissive Parent Cell Line Huh7

(Submitter supplied) Drugs directly targeting Hepatitis C (HCV) are often rendered useless by the high mutation rate of the virus. Thus, we deduce that targeting of host factor that affect HCV replication may provide enhanced therapy fort HCV infection. Hepatocyte cell line Huh7 is known to be non-permissive for Hepatits C (HCV) replication. Through a method developed by the Rice laboratory (Blight, K.J., et al., J Virol, 2002), selection of a small subset of permissive hepatocytes is possible. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS4392
Platform:
GPL570
4 Samples
Download data: CEL, CHP
Series
Accession:
GSE25156
ID:
200025156
4.

TM4SF20 is reduced by TGF-β in A549 cells

(Submitter supplied) To find out genes regulated by TGF-β in A549 cells, we compared gene expression of cells treated with 1ng/ml TGF-β versus non-treated cells and find out that expression of one transmembrane protein, TM4SF20, is reduced by TGF-β.
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL570
2 Samples
Download data: CEL, CHP
Series
Accession:
GSE46024
ID:
200046024
5.

HCV Replication: permissive and non-permissive cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by array; Methylation profiling by genome tiling array
Platforms:
GPL570 GPL14546
8 Samples
Download data: CEL, CHP, GFF, PAIR
Series
Accession:
GSE31962
ID:
200031962
6.

Huh7 cells exist as a mixed population of cells with distinct patterns of gene methylation

(Submitter supplied) A powerful approach to study innate antiviral response is to compare the difference between wild type Huh7 cells, which do not support robust replication of hepatitis C virus (HCV)2, versus certain subclones of Huh7 cells that are permissive for HCV replication. We generated two permissive cell lines and two independent non-permissive subclone from Huh7 cells. We compared the global methylation pattern of these different cells and find that Huh7 cells exist as a heterogeneous population of cells with distinct patterns of gene methylation.
Organism:
Homo sapiens
Type:
Methylation profiling by genome tiling array
Platform:
GPL14546
6 Samples
Download data: GFF, PAIR
Series
Accession:
GSE31960
ID:
200031960
7.

MX1 is Silenced in Permissive HRP4 Cells Supporting HCV Replication

(Submitter supplied) MX1 is a well-characterized interferon-induced antiviral gene. MX1 is activated by viral infection due to interferon production in cells. We treated non-permissive Huh7 cells and permissive HRP4 cells with interferon. We compared the expression of genes induced by interferon to determine host factors affecting HCV replication.
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL570
2 Samples
Download data: CEL, CHP, TXT
Series
Accession:
GSE31903
ID:
200031903
8.

The Effect of Hepatitis C Virus Infection on Host Gene Expression

(Submitter supplied) Hepatitis C Virus is a leading cause of chronic liver disease. The identification and characterisation of key host cellular factors that play a role in the HCV replication cycle is important for the understanding of disease pathogenesis and the identification of novel anti-viral therapeutic targets. Gene expression profiling of HCV infected Huh7 cells by microarray analysis was performed to identify host cellular genes that are transcriptionally regulated by infection. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Dataset:
GDS4160
Platform:
GPL570
28 Samples
Download data: CEL
Series
Accession:
GSE20948
ID:
200020948
9.
Full record GDS4160

Hepatitis C Virus infection effect on Huh7 hepatoma cells: time course

Analysis of Huh7 hepatoma cells infected with JFH-1 Hepatitis C Virus (HCV) at 6, 12, 18, 24, and 48 hours post-infection. HCV is a leading cause of chronic liver disease. Results provide insight into molecular mechanisms that contribute to HCV-associated liver pathogenesis.
Organism:
Homo sapiens
Type:
Expression profiling by array, count, 2 infection, 5 time sets
Platform:
GPL570
Series:
GSE20948
28 Samples
Download data: CEL
10.

Comparison of Huh6 and Huh7 cells under IFNgamma treatment

(Submitter supplied) All major types of interferon (IFN) efficiently inhibit hepatitis C virus (HCV) replication in vitro and in vivo. Remarkably, HCV replication is not sensitive to IFNγ in the hepatoma cell line Huh6, despite an intact signaling pathway. We performed transcriptome analyses between Huh6 and Huh-7 to identify effector genes of the IFNγ response and thereby identified the DExD/H box helicase DDX60L as a restriction factor of HCV replication. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL570
7 Samples
Download data: CEL
Series
Accession:
GSE68927
ID:
200068927
11.

Expression data from Huh7.5.1 cells transfected with siNDRG1 or siNT

(Submitter supplied) Host cells harbor various intrinsic mechanisms to restrict viral infections as a first line of antiviral defense. Viruses have evolved various countermeasures against these antiviral mechanisms. Here we show that N-Myc Downstream-Reguated Gene 1 (NDRG1) limits productive HCV infection by inhibiting viral assembly. Interestingly, HCV infection down-regulates NDRG1 protein and mRNA expression. Loss of NDRG1 increases the size and number of lipid droplets, which are the sites of HCV assembly. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL570
6 Samples
Download data: CEL
Series
Accession:
GSE106988
ID:
200106988
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