GEO DataSets

Analysis of histological normal breast epithelia from both ER- and ER+ breast cancer patients and prophylactic mastectomy patients, and normal breast epithelia from reduction mammoplasty patients. Results provide insight into the mechanisms underlying breast cancer initiation and progression.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 2 disease state, 4 specimen sets

Platform:

GPL96

Series:

GSE20437

42 Samples

Download data: CEL

Analysis of wild-type embryos injected with Ovo1 morpholino antisense oligos. At 12 hpf, the Ovo1 morphants begin showing neural crest (NC) defects wherein a subset of NC cells aggregates in the dorsal midline above the neural tube. Results provide insight into the role of Ovo1 in NC migration.

Organism:

Danio rerio

Type:

Expression profiling by array, count, 2 genotype/variation sets

Platform:

GPL1319

Series:

GSE21539

6 Samples

Download data: CEL

Analysis of airway epithelial cells (AEC) from children with asthma and healthy non-atopic controls. Epithelial cells from asthmatic children fail to heal a wound in vitro. Results provide insight into the molecular mechanisms underlying dysregulated AEC repair.

Organism:

Homo sapiens

Type:

Expression profiling by array, transformed count, 2 disease state sets

Platform:

GPL96

Series:

GSE18965

16 Samples

Download data: CEL

Analysis of hippocampi of postnatal day 2 mutants lacking Zbtb20. Zbtb20 is a member of the BTB/POZ zinc finger family. Results provide insight into the role of Zbtb20 in hippocampal development.

Organism:

Mus musculus

Type:

Expression profiling by array, count, 2 genotype/variation sets

Platform:

GPL1261

Series:

GSE19513

4 Samples

Download data: CEL

Analysis of HPB-ALL and KOPT-K1 cells treated with SAHM1, an antagonist of the NOTCH transcription factor. SAHM1 is an alpha-helical hydrocarbon stapled peptide derived from MAML1. Results provide insight into the specificity of the antagonistic effect of SAHM1 on gene expression driven by NOTCH.

Organism:

Homo sapiens

Type:

Expression profiling by array, transformed count, 2 agent, 2 cell line sets

Platform:

GPL570

Series:

GSE18198

12 Samples

Download data: CEL

Analysis of embryonic fibroblast-like (EF) differentiated cells derived from H9 embryonic stem cells. Foreskin fibroblasts, and undifferentiated H9 and embryonic carcinoma cells also examined. Results provide insight into the differences between EF cells and fibroblasts at the molecular level.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 4 cell type sets

Platform:

GPL2700

Series:

GSE5416

4 Samples

Download data: TXT

Analysis of endometrial epithelial cells from stage I or II endometrioid carcinomas after treatment with oestrogen or tamoxifen (TMX). Results provide insight into the molecular basis of the association of TMX treatment of breast cancer with an increased incidence of endometrial cancer.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 3 agent, 2 disease state sets

Platform:

GPL8300

Series:

GSE3013

7 Samples

Download data: CEL, EXP

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html Array has been discontinued by Affymetrix Protocol: Probe sets for over 21,700 transcripts provide comprehensive coverage of the Canis familiaris genome. Sequence information for the GeneChip Canine Genome Array includes public content from GenBank® (release 137.0, August 2003), dbEST (October 2003), and proprietary beagle sequence content licensed from LION bioscience AG. more...

Organism:

Canis lupus familiaris

3 DataSets

13 Series

167 Samples

Download data

(Submitter supplied) This array is identical to GPL570, but a custom, remapped CDF environment is used to extract data. The CDF file (Hs133P_Hs_UG_8.cdf) was created by the Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Protocol: See manufacturer's website ( http://www.affymetrix.com ).

Organism:

Homo sapiens

1 DataSet

1 Series

1 Related Platform

10 Samples

Download data: CDF

(Submitter supplied) The P. furiosus full-genome microarray represented 2065 protein encoding genes. DNA fragments for spotting were produced by PCR. The array was constructed by designing oligonucleotide primers to span the most unique portions of each gene, averaging 350 nucleotides in length. A custom Perl program was written to select primers with the most desirable thermodynamic conditions possible for each gene using the Whitehead Institute's Primer3 program (version 3.09) as its core analysis engine. more...

Organism:

Pyrococcus furiosus

1 DataSet

1 Series

21 Samples

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(Submitter supplied) 2006-10-26_MM5_HELP_Promoter (design id=4803) Custom DNA methylation microarray for the HELP assay, designed to cover 25,720 HpaII-amplifiable fragments around promoter regions and imprinted regions of the mouse genome. Based on the May 2004 release (NCBI Build 33, UCSC mm5) of the mouse genome. While the data probes are the same for both the 2006-10-26_MM5_HELP_Promoter array (design id=4803) and the 2005-07-20_MM5_HELP_Promoter array (design id=2371), they differ in the number of random probes included. more...

Organism:

Mus musculus

6 Series

50 Samples

Download data: NDF

(Submitter supplied) Expression design for Mouse from mm8. Protocol: Nimblegen

Organism:

Mus musculus

5 Series

27 Samples

Download data: NDF, NGD

(Submitter supplied) Probes were designed for the intergenic regions of Mycoplasma hyopneumoniae. Intergenic regions were defined as noncoding DNA sequences between annotated genes in the M. hyopneumoniae genome sequence (GenBank accession # AE017332). Intergenic regions larger than 50 bp were considered for analysis, and those between 125-450 bp were considered for PCR-based probes. Oligonucleotides were designed for some intergenic regions based on the inability to produce PCR products or the length of the region (50-125 bp). more...

Organism:

Mesomycoplasma hyopneumoniae

1 Series

4 Samples

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(Submitter supplied) Corning UltraGAPS substrates (catalog #40016) Protocol: Probes were designed for the intergenic regions of Mycoplasma hyopneumoniae. Intergenic regions were defined as noncoding DNA sequences between annotated genes in the M. hyopneumoniae genome sequence (GenBank accession # AE017332). Intergenic regions larger than 50 bp were considered for analysis, and those between 125-450 bp were considered for PCR-based probes. more...

Organism:

Mesomycoplasma hyopneumoniae

1 Series

2 Samples

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(Submitter supplied) 70mer probes were designed to detect plant viruses infection in genus level. This microarray platform is able to detect 169 plant virus species of 13 virus genera. Protocol: The 70-mer oligonucleotide arrays were synthesized on 75-mmx25-mm glass slides using a SmartArrayer system (CapitalBio, China). All probes were spotted three times on the microarray. The reverse complementary sequences of the Capillovirus and Tospovirus probes were synthesized to analyze the probe strand effect. more...

Organism:

Sobemovirus; Carlavirus; Capillovirus; Potexvirus; Potyvirus; Tobamovirus; Comovirus; Nepovirus; Tobravirus; Cucumovirus; Ilarvirus; Pomovirus; Orthotospovirus

1 Series

17 Samples

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(Submitter supplied) see manufacturer's web site at http://www.agilent.com/

Organism:

Homo sapiens

2 Series

8 Samples

Download data: TXT

(Submitter supplied) Species: Aspergillus fumigatus Strain: Af293 Type of array: Eukaryotic Expression(4plex) Number of targets: 9,887 Length of probes: 60-mer Number of probes per target: 7 pairs Replicate: 1 Oligonucleotide sequences are available in the '2009-01-07_RDKK143_Afum_60mer_expr.ndf' supplementary file. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Organism:

Aspergillus fumigatus Af293

1 Series

4 Samples

Download data: NDF, NGD

(Submitter supplied) Podospora anserina 60 mers Oligonucleotide Microarray by Agilent Technologies : microarray with a unique probe per CDS. The final array design contained 10,539 probes for nuclear CDS and 17 mitochondrial CDS probes. Each probe was replicated four times on each 44K array. See Podopora anserina database's web site at http://podospora.igmors.u-psud.fr/padb/index.php Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Podospora anserina

6 Series

164 Samples

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(Submitter supplied) Podospora anserina Oligonucleotide Microarray by Agilent Technologies. Intermediate microarray with 4 different probes per CDS used to select one probe per CDS to develop a custom expression microarray. Barecodes of arrays with this design are 251636610001 to 251636610005. See Podopora anserina database's web site at http://podospora.igmors.u-psud.fr/padb/index.php Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Podospora anserina

1 Series

20 Samples

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