U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 13

1.

Small RNA expression and strain specificity in the rat

(Submitter supplied) Background Digital gene expression (DGE) profiling has become an established tool to study RNA expression. Here, we provide an in-depth analysis of small RNA DGE profiles from two different rat strains (BN-Lx and SHR) from six different rat tissues (spleen, liver, brain, testis, heart, kidney). We describe the expression patterns of known and novel micro (mi)RNAs and piwi-interacting (pi)RNAs. We confirmed the expression of 589 known miRNAs and identified 56 miRNAs homologous to known human or mouse miRNAs, as well as 45 new rat miRNAs. more...
Organism:
Rattus norvegicus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL9690
16 Samples
Download data: FA, TXT
Series
Accession:
GSE19054
ID:
200019054

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Limitations and possibilities of small RNA digital gene expression profiling

(Submitter supplied) Analysis of RNA samples by massive parallel sequencing holds the promise to assay gene expression in both a quantitative and qualitative fashion and therefore allows for digital gene expression (DGE) profiling. We assessed the effect of different experimental approaches by generating small RNA libraries from a biological sample as well as an equimolar pool of synthetic miRNAs and analyzed the results using capillary dideoxy sequencing and next-generation sequencing platforms (Roche/454, AB/SOLiD and Illumina/Solexa). more...
Organism:
Homo sapiens; Rattus norvegicus
Type:
Non-coding RNA profiling by high throughput sequencing
4 related Platforms
20 Samples
Download data: FA
Series
Accession:
GSE16374
ID:
200016374

PubMed Similar studies

3.

Limitations and possibilities of small RNA digital gene expression profiling: spleen and liver comparison (SOLiD)

(Submitter supplied) Analysis of RNA samples by massive parallel sequencing holds the promise to assay gene expression in both a quantitative and qualitative fashion and therefore allows for digital gene expression (DGE) profiling. We assessed the effect of different experimental approaches by generating small RNA libraries from a biological sample as well as an equimolar pool of synthetic miRNAs and analyzed the results using capillary dideoxy sequencing and next-generation sequencing platforms (Roche/454, AB/SOLiD and Illumina/Solexa). more...
Organism:
Rattus norvegicus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL9413
2 Samples
Download data
Series
Accession:
GSE16371
ID:
200016371

PubMed Similar studies

4.

BN-Lx_adult_male_whole_liver, replicate 3

Organism:
Rattus norvegicus
Source name:
adult_male_whole_liver
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471510
ID:
300471510

SRA Run Selector

5.

BN-Lx_adult_male_whole_liver, replicate 2

Organism:
Rattus norvegicus
Source name:
adult_male_whole_liver
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471509
ID:
300471509

SRA Run Selector

6.

BN-Lx_adult_male_whole_kidney

Organism:
Rattus norvegicus
Source name:
adult_male_whole_kidney
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471502
ID:
300471502

SRA Run Selector

7.

BN-Lx_adult_male_whole_testis

Organism:
Rattus norvegicus
Source name:
adult_male_whole_testis
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471501
ID:
300471501

SRA Run Selector

8.

BN-Lx_adult_male_whole_heart

Organism:
Rattus norvegicus
Source name:
adult_male_whole_heart
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471500
ID:
300471500

SRA Run Selector

9.

BN-Lx_adult_male_whole_spleen

Organism:
Rattus norvegicus
Source name:
adult_male_whole_spleen
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471499
ID:
300471499

SRA Run Selector

10.

BN-Lx_adult_male_whole_liver

Organism:
Rattus norvegicus
Source name:
adult_male_whole_liver
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471498
ID:
300471498

SRA Run Selector

11.

BN-Lx_adult_male_whole_brain

Organism:
Rattus norvegicus
Source name:
adult_male_whole_brain
Platform:
GPL9690
Series:
GSE19054
Download data: TXT
Sample
Accession:
GSM471497
ID:
300471497

SRA Run Selector

12.

small_RNA_rat_liver

Organism:
Rattus norvegicus
Source name:
rat liver
Platform:
GPL9413
Series:
GSE16371 GSE16374
Download data
Sample
Accession:
GSM410822
ID:
300410822

13.

small_RNA_rat_spleen

Organism:
Rattus norvegicus
Source name:
rat spleen
Platform:
GPL9413
Series:
GSE16371 GSE16374
Download data
Sample
Accession:
GSM410821
ID:
300410821

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Filters: Manage Filters

db=gds|term=txid10116[orgn]%20AND%20%22strain%20BN-Lx%22[All%20Fields]|query=1|qty=3|blobid=MCID_662121c7cf05c9437d595be4|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Important Links

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > Genes & Expression > Gene Expression Omnibus (GEO) Datasets
Support Center