GEO DataSets

(Submitter supplied) Coconut has a redundant gene pool to flourish under salt stress conditions; in particular the retention of genes resulting from the WGD p and the high genome size with a high TE content is a favourable context for gene innovation (e.g. sub or even neo-functionalization events) regarding abiotic stress tolerance. Four known pathways (ABA, ABA independent, ROS, Calcium/PLC and SOS) are present and expressed. more...

Organism:

Cocos nucifera

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26924

22 Samples

Download data: TXT

(Submitter supplied) In monocots other than the cereals maize and rice, the repertoire and diversity of microRNAs (miRNAs) and the populations of phased, secondary, small interfering RNAs (phasiRNAs) are poorly characterized. To remedy this, we sequenced small RNAs (sRNAs) from vegetative and dissected inflorescence tissue in 28 phylogenetically diverse monocots and from several early-diverging angiosperm lineages, as well as publicly available data from 10 additional monocot species. more...

Organism:

Sorghum bicolor; Zea mays; Cyperus alternifolius; Zostera marina; Streptochaeta angustifolia; Elaeis guineensis; Nymphaea colorata; Echinodorus uruguayensis; Raddia brasiliensis; Prosthechea radiata; Acorus calamus; Setaria viridis; Canna indica; Anomochloa marantoidea; Kniphofia uvaria; Phalaenopsis equestris; Sagittaria montevidensis; Freycinetia cumingiana; Liriope muscari; Musa acuminata var. zebrina; Musa ABB Group; Musa acuminata AAA Group; Colocasia esculenta; Lemna gibba; Oryza glaberrima; Ananas comosus; Cocos nucifera; Phyllostachys edulis; Phoenix dactylifera; Hemerocallis lilioasphodelus; Pharus parvifolius; Tradescantia fluminensis; Goudaea ospinae

Type:

Non-coding RNA profiling by high throughput sequencing

34 related Platforms

195 Samples

Download data: TXT

(Submitter supplied) In this study, we found that the highly expressed miRNAs appear in EPDELNs (Edible plant-derived exosome-like nanoparticles) have the potential to regulate human mRNA in a cross-kingdom manner. Target prediction and functional analysis revealed that highly expressed miRNAs were closely associated with inflammatory responses and cancer-related pathways. Therefore, we hypothesized that miRNAs in EPDELNs may be a crucial factor behind the regulatory function of EPDELNs.

Organism:

Actinidia chinensis; Cucumis melo; Pisum sativum; Vaccinium; Cocos nucifera; Citrus x paradisi; Solanum lycopersicum; Glycine max; Zingiber officinale; Pyrus; Citrus reticulata

Type:

Non-coding RNA profiling by high throughput sequencing

11 related Platforms

11 Samples

Download data: TXT, XLSX