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Items: 1 to 20 of 3312

1.

Global profiling of genes expressed in silk glands of Philippine-reared mulberry silkworm (Bombyx mori)

(Submitter supplied) This study aims to bridge the gap in our knowledge of Philippine-reared silkworm by analyzing the gene expression profiles in the silkworm silk glands through next generation sequencing. RNA was isolated from the silk glands of 5th instar larvae and mRNA-enriched libraries were sequenced with NextSeq 500 (Illumina). To compare gene expression profiles of strains from CAR (Benguet) and TCMO (Misamis Oriental), DESeq2 analysis was performed. more...
Organism:
Bombyx mori
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30635
9 Samples
Download data: CSV, TXT
Series
Accession:
GSE184152
ID:
200184152
2.

A single-cell transcriptomic atlas characterizes the silk-producing organ in the silkworm

(Submitter supplied) The silk gland (SG) of the domesticated silkworm Bombyx mori, an economically important insect that has been used for silk production for over 5000 years, is a remarkable organ that produces vast amounts of silk with exceptional properties . Little is known about which SG cells execute silk protein synthesis and its precise spatiotemporal control. Here, we used single-cell RNA-seq to build a comprehensive cell atlas of the B. more...
Organism:
Bombyx mori
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29210
3 Samples
Download data: MTX, TSV
Series
Accession:
GSE193279
ID:
200193279
3.

Identification of (E)-β-farnesene impair the development and survival of Chilo suppressalis larval by disrupting insect hormone balance

(Submitter supplied) In this study, an artificial feeding study containing (E)-β-farnesene (0.8g/kg) with C. suppressalis larvae was conducted to investigate its physical performance, and results revealed that the average 2nd instar duration in C. suppressalis significantly increased from 4.78 days to 6.31 days after Eβf treatment (P<0.001), and in 3rd instar C. larvae also significantly increased from 5.70 days to 8.00 days (P<0.001). more...
Organism:
Chilo suppressalis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30357
6 Samples
Download data: FA, TXT
Series
Accession:
GSE179532
ID:
200179532
4.

Next Generation Sequencing Facilitates Quantitative Analysis of the transcriptome of different developmental stages and tissues in Ostrinia furnacalis

(Submitter supplied) The goals of this study are to obtain the transcriptome profiling (RNA-seq) of different developmental stages and tissues in Ostrinia furnacalis. Methods: O. furnacalis embryos were collected less than 12 h post oviposition. 1st, 3rd and 5th instar of the Asian corn borer, which represents the newly hatched larvae, the middle stage of larvae and the mature larvae, was harvested for subsequent experiments. more...
Organism:
Ostrinia furnacalis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32008
30 Samples
Download data: TXT
Series
Accession:
GSE197663
ID:
200197663
5.

Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells

(Submitter supplied) PIWI-interacting RNAs (piRNAs) bind to PIWI proteins to assemble the piRISC, which represses germline transposons. Maelstrom (Mael) is necessary for piRISC biogenesis in germ cells, but its function remains unclear. Here, we show that Mael interconnects Spindle-E (Spn-E), a key piRISC biogenesis factor, with unloaded Siwi, one of two silkworm PIWI members. Mael also assembles a subset of nuage, a non-membranous organelle involved in piRISC biogenesis. more...
Organism:
Bombyx mori
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL18754 GPL29210
12 Samples
Download data: FASTA, TXT
6.

Dosage compensation in Bombyx mori is achieved by partial repression of both Z chromosomes in males

(Submitter supplied) We report the ATAC-seq data that reveal chromatin accessibility during Bombyx mori development
Organism:
Bombyx mori
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL29210
12 Samples
Download data: BW
Series
Accession:
GSE191164
ID:
200191164
7.

Siwi cooperates with Par-1 kinase to regulate mitochondrial Papi scaffolding Siwi-piRISC biogenesis

(Submitter supplied) Bombyx Papi contains two K-homology (KH) domains and one Tudor domain, and acts as a scaffold for Siwi-piRISC biogenesis on the mitochondrial surface. To initiate this process, Papi binds first to Siwi via the Tudor domain and subsequently to piRNA precursors loaded onto Siwi via the KH domains. This second action depends on phosphorylation of Papi. However, its underlying mechanism remains unknown. more...
Organism:
Bombyx mori
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL18754
6 Samples
Download data: TXT
Series
Accession:
GSE179432
ID:
200179432
8.

Comparative analysis of testis transcriptome between a genetic male sterile line (GMS) and its wild-type 898WB in silkworm, Bombyx mori

(Submitter supplied) Purpose:The purpose of study these processes, is helpful to understand the mechanisms of genetic sterility of lepidopteran insects and achieve sterile insect technique (SIT) for pest control. Methods:Intact testes were dissected on day 5 of fifth-instar larvae and immediately frozen in liquid nitrogen for RNA-Seq. The testes from three silkworms were taken as one biological sample, and three samples per strain were prepared as biological replicates. more...
Organism:
Bombyx mori
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30062
6 Samples
Download data: TXT
Series
Accession:
GSE191033
ID:
200191033
9.

The genetic basis of structural colour variation in mimetic Heliconius butterflies

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Heliconius melpomene rosina; Heliconius melpomene cythera; Heliconius erato demophoon; Heliconius erato cyrbia
Type:
Expression profiling by high throughput sequencing
4 related Platforms
64 Samples
Download data
Series
Accession:
GSE190380
ID:
200190380
10.

The genetic basis of structural colour variation in mimetic Heliconius butterflies [melpomene]

(Submitter supplied) We use RNAseq data to perform differential gene expression analysis to identify genes controlling structural colouration in two co-mimetic species of Heliconius butterfly - Heliconius erato and Heliconius melpomene. We use comparisons between iridescent and non-iridescent subspecies of Helcionius erato (H. e. cyrbia and H. e. demophoon, respectively) and Helcionius melpomene (H. m. cythera and H. m. more...
Organism:
Heliconius melpomene cythera; Heliconius melpomene rosina
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL31038 GPL31037
32 Samples
Download data: CSV
Series
Accession:
GSE190379
ID:
200190379
11.

The genetic basis of structural colour variation in mimetic Heliconius butterflies [erato]

(Submitter supplied) We use RNAseq data to perform differential gene expression to identify genes controlling structural colouration in two co-mimetic species of Heliconius butterfly - Heliconius erato and Heliconius melpomene. We use comparisons between iridescent and non-iridescent subspecies of Helcionius erato (H. e. cyrbia and H. e. demophoon, respectively) and Helcionius melpomene (H. m. cythera and H. m. rosina, respectively) at two separate developmental stages, 50% and 70% of development. more...
Organism:
Heliconius erato demophoon; Heliconius erato cyrbia
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL31036 GPL31035
32 Samples
Download data: CSV
Series
Accession:
GSE190378
ID:
200190378
12.

MicroRNAs Mediate Insecticide Tolerance in Spodoptera frugiperda

(Submitter supplied) Spodoptera frugiperda is the world’s major agricultural pests, and has the distinctive features of high fecundity, strong migratory capacity and high resistance to most insecticides. At present, the control of S. frugiperda in China relies mainly on the spraying of chemical insecticides. MicroRNAs (miRNAs) are a class of small, single-stranded, non-coding RNAs, and play crucial regulatory roles in various physiological processes, including the insecticide resistance in insects. more...
Organism:
Spodoptera frugiperda
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL25030
15 Samples
Download data: XLSX
Series
Accession:
GSE189968
ID:
200189968
13.

Exploration of RNA-Seq data to identify a potential pathogen of the leaf-mining moth, Stomphastis sp. (Lepidoptera: Gracillariidae)

(Submitter supplied) The leaf-mining moth (Stomphastis sp.) was imported to Australia as a potential biological control agent of a weed, Bellyache bush (Jatropha gossypiifolia). The insect colony has been maintained in the quarantine facility for over eight years. Recently, significant mortality was observed in the population. The larvae demonstrated swollen intersegments with a fragile integument. The infected larvae are cloudy muted green or yellowish whereas a healthy late instar larva is a vivid green. more...
Organism:
unclassified Stomphastis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30861
2 Samples
Download data: FA, XLSX
Series
Accession:
GSE185938
ID:
200185938
14.

Ascoviruses radically optimize virion proliferation by fully cleaving host cells into viral vesicles that circulate in hemolymph

(Submitter supplied) We used RNA-Sequencing technology to analyze the transcriptomes of two ascovirus isolates, SfAV and TnAV, over three weeks.
Organism:
Spodoptera frugiperda; Trichoplusia ni
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL27985 GPL30114
48 Samples
Download data: XLSX
Series
Accession:
GSE174236
ID:
200174236
15.

Next generation sequencing and de novo transcriptome analysis of Papilio clytia and Atrophaneura mencius larvae upon lipopolysaccharide challenge

(Submitter supplied) Gene expression profiling was performed by next generation sequencing strategy to explore the transcriptional changes of Papilio clytia and Atrophaneura mencius larvae in response to LPS challenge
Organism:
Atrophaneura mencius; Papilio clytia
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL27954 GPL27955
4 Samples
Download data: FA, TXT
Series
Accession:
GSE142679
ID:
200142679
16.

Antibiotics exposure impacts the gut microbiota and influences energy and metabolic homeostasis in Spodoptera frugiperda

(Submitter supplied) Insect gut microbiota plays important roles in acquiring nutrition, preventing pathogens infection, immune responses, and communicating with the environment. Gut microbiota can be affected by some external factors such as foods, temperature, and antibiotics. Spodoptera frugiperda (Lepidoptera: Noctuidae) is an important destructive pest of grain crops all over the world. The function of gut microbiota in S. more...
Organism:
Spodoptera frugiperda; insect gut metagenome
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL30191 GPL29193
12 Samples
Download data: FA, TXT
17.

Expression patterns of TnAV-6a1 genes in the combination of fat body, Epidermis and tracheal matrix tissues compared to hemolymph viral vesicles.

(Submitter supplied) Purpose: To compare the TnAV-6a1 variant infected Trichoplusia ni larval transcriptome of hemolymph viral vesicles versus those of other major larval tissues specifically, the fat body, epidermis and tracheal matrix (referred to as FET tissues).
Organism:
Trichoplusia ni
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23793
26 Samples
Download data: TXT, XLSX
Series
Accession:
GSE114902
ID:
200114902
18.

New-Onset IgG Autoantibodies in Hospitalized Patients with COVID-19

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Escherichia coli; Spodoptera frugiperda; Bos taurus; Capra aegagrus; Homo sapiens; Sus scrofa; Triticum aestivum; Cricetulus griseus; synthetic construct
Type:
Protein profiling by protein array
4 related Platforms
598 Samples
Download data: XLSX
Series
Accession:
GSE180743
ID:
200180743
19.

New-Onset IgG Autoantibodies in Hospitalized Patients with COVID-19 [viral]

(Submitter supplied) We developed three different protein arrays to measure IgG autoantibodies associated with Connective Tissue Diseases (CTDs), Anti-Cytokine Antibodies (ACA), and anti-viral antibody responses in 147 hospitalized COVID-19 patients in three different centers.
Organism:
Homo sapiens; Escherichia coli; Spodoptera frugiperda; Bos taurus; synthetic construct; Triticum aestivum; Sus scrofa; Capra aegagrus; Cricetulus griseus
Type:
Protein profiling by protein array
Platform:
GPL30433
111 Samples
Download data: XLSX
Series
Accession:
GSE180742
ID:
200180742
20.

New-Onset IgG Autoantibodies in Hospitalized Patients with COVID-19 [Unpaired Cytokine and Chemokine]

(Submitter supplied) We developed three different protein arrays to measure IgG autoantibodies associated with Connective Tissue Diseases (CTDs), Anti-Cytokine Antibodies (ACA), and anti-viral antibody responses in 147 hospitalized COVID-19 patients in three different centers.
Organism:
Escherichia coli; Triticum aestivum; Spodoptera frugiperda; Bos taurus; Homo sapiens; Sus scrofa; Capra aegagrus; Cricetulus griseus
Type:
Protein profiling by protein array
Platform:
GPL30432
89 Samples
Download data: XLSX
Series
Accession:
GSE180741
ID:
200180741
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