GEO DataSets

(Submitter supplied) ‘Hangju’ is a variety of Chrysanthemum morifolium Ramat with both aesthetic and medicinal value, cultivated as traditional Chinese medicine for four centuries. The cultivation of ‘Hangju’ faces a significant challenge due to waterlogging stress, resulting in a considerable decrease in crop yield. Nevertheless, there is a scarcity of studies exploring the underlying mechanisms of waterlogging tolerance in ‘Hangju’. more...

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL34560

40 Samples

Download data: TXT

(Submitter supplied) Expression was measured for variety 2 (V2) and mutant 2 (M2) to find differences in expression that could contribute to the increase in the percentage of disc florets.

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33243

24 Samples

Download data: CSV, FASTA

(Submitter supplied) Expression was measured for variety 1 (V1) and mutant 1 (M1) to find differences in expression that could contribute to the increase in the percentage of disc florets.

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33243

24 Samples

Download data: CSV, FASTA

(Submitter supplied) The samples were respectively from three replicates of the salt stress treatment and the control, then we obtained six cDNA libraries. In total, 983,827 transcripts and 469,059 unigenes were constructed. We got a total of 75,070 differentially expressed genes (DEGs), of which 48,965 were up-regulated and the other 26,105 were down regulated under the salt treatment.

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23798

6 Samples

Download data: FASTA, TXT

(Submitter supplied) The mixed sample was obtained from the salt stress treatment and the control, then we obtained one cDNA library. In total, 3,717,516 subreads and 141,445 Consensus reads were constructed.

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23798

6 Samples

Download data: FASTA, TXT

(Submitter supplied) We generated 12 Gb of high-quality sequencing data (~6 Gb per sample) to clarify the molecular mechanism of salt tolerance between wild tipe and transgenic DgWRKY5 chrysanthemum under normal condition. A total of 1078 differentially expressed genes (DEGs) (593 up-regulated and 485 down-regulated) were identified between CK and DgWRKY5, including genes encoding transcription factors and protein kinases. more...

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23798

2 Samples

Download data: FASTA, XLS

(Submitter supplied) We used the RNA-Seq platform to perform a de novo transcriptome assembly to analyze chrysanthemum (Dendranthema grandiflorum) transcription response to low temperature. Using Illumina sequencing technology, a total of 86,444,237 high-quality clean reads and 93,837 unigenes were generated from four libraries: T01, controls; T02, 4 ℃ cold acclimation (CA) for 24 h; T03, -4 ℃ freezing treatments for 4 h with prior CA; and T04, -4 ℃ freezing treatments for 4 h without prior CA. more...

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23798

4 Samples

Download data: FA, TXT

(Submitter supplied) To identify the regulatory steps that control chlorophyll accumulation, we compared gene expression in petals and leaves of chrysanthemum cultivars with different chlorophyll levels. Microarray analyses showed that the expression levels of chlorophyll biosynthesis genes encoding glutamyl-tRNA reductase, Mg-protoporphyrin IX chelatase, Mg-protoporphyrin IX monomethylester cyclase, and protochlorophyllorophyllide oxidoreductase were well associated with chlorophyll content: their expression levels were lower in white petals than in green petals, and were highest in leaves. more...

Organism:

Chrysanthemum x morifolium

Type:

Expression profiling by array

Platform:

GPL23932

12 Samples

Download data: TXT

(Submitter supplied) Arrays of this design have barcodes that begin with 16084984 or 2584984. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Probe Names. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Chrysanthemum x morifolium

1 Series

12 Samples

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