txid6306[Organism] - GEO DataSets

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Select item 2002680381.

Plant parasitic nematodes single embryo RNA sequencing

(Submitter supplied) In order to study the similarities and differences in embryonic development between plant-parasitic nematodes and free-living nematodes, we performed RNA-seq on embryos of three plant-parasitic nematodes at a total of 11 stages from the single-cell stage to the J1 stage

Organism:: Meloidogyne incognita; Heterodera glycines; Ditylenchus destructor

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL34498 GPL34499 GPL34500
162 Samples

Download data: TXT

Series

Accession:: GSE268038

ID:: 200268038

Select item 2001681502.

Meloidogyne incognita RNA-seq

(Submitter supplied) We mainly descibed expression of genes of Meloidogyne incognita second stage juveniles under starvation stress

Organism:: Meloidogyne incognita

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29804
6 Samples

Download data: TXT

Series

Accession:: GSE168150

ID:: 200168150

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001168473.

MELOHOSTRACE: Whole genome polymorphism across Meloidogyne incognita isolates showing different biological traits

(Submitter supplied) High-coverage whole genome sequencing of 11 Brazilian isolates of the root-knot nematode Meloidogyne incognita, presenting different host plant preferences and different geographical origins. Four M. incognita host races had been proposed in the past, based on host (in)compatibility on four different plant strains. The objective was to assess whether genomic variations (SNP) correlate with host range compatibility, geographical origin and host plant of origin.

Organism:: Meloidogyne incognita

Type:: Other

Platform:: GPL25316
11 Samples

Download data: VCF

Series

Accession:: GSE116847

ID:: 200116847

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001004984.

Characterization of small RNAs expressed in roots and galls from Arabidopsis thaliana induced by the plant parasitic nematodes Meloidogyne incognita

(Submitter supplied) By sequencing small RNAs from uninfected Arabidopsis roots and from galls seven and 14 days post infection with Meloidogyne incognita, we sequenced by SOLiD technology the RNA fraction below 50nt. We identified 24 miRNAs differentially expressed in gall as putative regulators of gall development.

Organism:: Arabidopsis thaliana; Meloidogyne incognita

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL23625 GPL23626 GPL16033
15 Samples

Download data: TXT

Series

Accession:: GSE100498

ID:: 200100498

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000887635.

Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both plant and nematode during susceptible and resistance responses.

(Submitter supplied) Purpose: To understand the molecular mechanisms involved in disease development during plant-nematode interactions. Methods: We have taken a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time points from susceptible plants (PR: Pusa Ruby) and two infection time points from resistant plants (M36: Transgenic MM line), grown under soil conditions. more...

Organism:: Meloidogyne incognita; Solanum lycopersicum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22563
34 Samples

Download data: BW, TAB

Series

Accession:: GSE88763

ID:: 200088763

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000248336.

Identification of Novel and Conserved MicroRNAs of Root-knot Nematode Using a Deep-sequencing Approach

(Submitter supplied) 111,556,278 high-quality reads were obtained by a deep-sequencing approach that show an exact match to the genome of Meloidogyne incognita from the library of J2 juveniles of M. incognita (Mi). Based on these Solexa reads, 89 M. incognita microRNA genes were identified, which grouped into 67 non-redundant miRNAs with mature sequences. All of these candidate miRNAs were confirmed by qRT-PCR, and 26 of them could be detected in the library of the galls of cucumber root infected by M. more...