txid8355[orgn] AND "strain J"[All Fields] - GEO DataSets

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Select item 2001530581.

Identification and characterization of centromeric sequences in Xenopus laevis

(Submitter supplied) Centromeres play an essential role in cell division by specifying the site of kinetochore formation on each chromosome so that chromosomes can attach to the mitotic spindle for segregation. Centromeres are defined epigenetically by the histone H3 variant CEntromere Protein A (CENP-A). Dividing cells maintain the centromere by depositing new CENP-A each cell cycle to replenish CENP-A diluted by replication. more...

Organism:: Xenopus laevis

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL22393 GPL22426
15 Samples

Download data: BED, BW, FA

Series

Accession:: GSE153058

ID:: 200153058

SRA Run Selector

Select item 2001241682.

Axonal precursor miRNAs hitchhike on endosomes and locally regulate the development of neural circuits

(Submitter supplied) Various species of non-coding RNAs (ncRNAs) are enriched in subcellular compartments but the mechanisms orchestrating their localization and their local functions remain largely unknown. We investigated both aspects using the elongating retinal ganglion cell axon and its tip, the growth cone, as models. We reveal that specific endogenous precursor microRNAs (pre-miRNAs) are actively trafficked to distal axons by hitchhiking primarily on late endosomes / lysosomes. more...

Organism:: Xenopus laevis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21248
1 Sample

Download data: TXT

Series

Accession:: GSE124168

ID:: 200124168

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001152253.

Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Xenopus laevis

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL21248
12 Samples

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Series

Accession:: GSE115225

ID:: 200115225

PubMed Full text in PMC Similar studies

Select item 2001152244.

Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [ChIP-seq]

(Submitter supplied) VEGFA signaling is crucial for physiological and pathological angiogenesis and hematopoiesis. Although many context-dependent signaling pathways downstream of VegfA have been uncovered, vegfa transcriptional regulation in vivo is unclear. Here, we show that ETS transcription factor Etv6 positively regulates vegfa expression during blood stem cell development through multiple transcriptional inputs. more...

Organism:: Xenopus laevis

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL21248
6 Samples

Download data: BED

Series

Accession:: GSE115224

ID:: 200115224

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001152205.

Etv6-dependent positive and negative gene regulatory network controls vegfa expression in vivo [RNA-seq]

Organism:: Xenopus laevis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21248
6 Samples

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Series

Accession:: GSE115220

ID:: 200115220

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000734316.

Developmental gene expression of Xenopus laevis J strain

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Xenopus laevis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17682
56 Samples

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Series

Accession:: GSE73431

ID:: 200073431

PubMed Full text in PMC Similar studies

Select item 2000734307.

Developmental gene expression of Xenopus laevis J strain [stage]

(Submitter supplied) Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Grant ID 221S0002).

Organism:: Xenopus laevis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17682
28 Samples

Download data: TXT

Series

Accession:: GSE73430

ID:: 200073430

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000734198.

Tissue gene expression of Xenopus laevis J strain [tissue]

(Submitter supplied) Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Grant ID 221S0002).

Organism:: Xenopus laevis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17682
28 Samples

Download data: TXT

Series

Accession:: GSE73419

ID:: 200073419

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000739059.

On the relationship of protein and mRNA dynamics in vertebrate embryonic development

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Xenopus laevis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20998
36 Samples

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Series

Accession:: GSE73905

ID:: 200073905

PubMed Full text in PMC Similar studies

Select item 20007390410.

On the relationship of protein and mRNA dynamics in vertebrate embryonic development [RiboZero]

(Submitter supplied) A biochemical explanation of development from the fertilized egg to the adult anatomy requires an understanding of the complement of proteins and RNAs expressed over time during embryogenesis. Here we present a comprehensive characterization of protein and mRNA dynamics across early development in Xenopus. Surprisingly, we find that most proteins change very little and duplicated genes are expressed similarly. more...