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MODO-UK HLA class I histocompatibility antigen, A-69 alpha chain-like [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100026822, updated on 3-Apr-2024

Summary

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Gene symbol
MODO-UK
Gene description
HLA class I histocompatibility antigen, A-69 alpha chain-like
See related
Ensembl:ENSMODG00000014336
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
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Genomic context

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See MODO-UK in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 2 NC_077228.1 (269074190..269103318, complement)
103 previous assembly MonDom5 (GCF_000002295.2) 2 NC_008802.1 (270353983..270377353, complement)

Chromosome 2 - NC_077228.1Genomic Context describing neighboring genes Neighboring gene MHC class I antigen Neighboring gene patr class I histocompatibility antigen, B-2 alpha chain Neighboring gene microRNA mir-12327-2 Neighboring gene RT1 class I histocompatibility antigen, AA alpha chain-like Neighboring gene HLA class II histocompatibility antigen, DM beta chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Association of primary central nervous system vasculitis with the presence of specific human leucocyte antigen gene variant. Kraemer M, et al. Clin Neurol Neurosurg, 2017 Sep. PMID 28734234
  2. Evolution of the opossum major histocompatibility complex: evidence for diverse alternative splice patterns and low polymorphism among class I genes. Baker ML, et al. Immunology, 2009 Sep. PMID 19191910, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Association of primary central nervous system vasculitis with the presence of HLA-A*69 .
    Title: Association of primary central nervous system vasculitis with the presence of specific human leucocyte antigen gene variant.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class I histocompatibility antigen, A-69 alpha chain-like
Names
MHC class I antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246247.1 → NP_001233176.1  HLA class I histocompatibility antigen, A-69 alpha chain-like

    See identical proteins and their annotated locations for NP_001233176.1

    Status: PROVISIONAL

    Source sequence(s)
    EU886706
    UniProtKB/TrEMBL
    A0A5F8GM49, C6ZIV1
    Related
    ENSMODP00000048504.1, ENSMODT00000060608.1
    Conserved Domains (2) summary
    cd07698
    Location:204 → 295
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00129
    Location:23 → 199
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077228.1 Reference mMonDom1.pri

    Range
    269074190..269103318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056814069.1 → XP_056670047.1  HLA class I histocompatibility antigen, A-69 alpha chain-like isoform X3

  2. XM_016428852.2 → XP_016284338.2  HLA class I histocompatibility antigen, A-69 alpha chain-like isoform X1

  3. XM_056814070.1 → XP_056670048.1  HLA class I histocompatibility antigen, A-69 alpha chain-like isoform X4

  4. XM_016428853.2 → XP_016284339.2  HLA class I histocompatibility antigen, A-69 alpha chain-like isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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