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PCDHGA12 protocadherin gamma subfamily A, 12 [ Pan troglodytes (chimpanzee) ]

Gene ID: 100034694, updated on 19-Mar-2021

Summary

Gene symbol
PCDHGA12
Gene description
protocadherin gamma subfamily A, 12
See related
Ensembl:ENSPTRG00000017346
Gene type
protein coding
RefSeq status
INFERRED
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
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Genomic context

See PCDHGA12 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) 5 NC_036884.1 (119609600..119691987)
104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 5 NC_006472.4 (141470107..141552429)

Chromosome 5 - NC_036884.1Genomic Context describing neighboring genes Neighboring gene protocadherin gamma subfamily A, 1 Neighboring gene protocadherin gamma subfamily A, 2 Neighboring gene protocadherin gamma subfamily A, 3 Neighboring gene protocadherin gamma subfamily B, 1 Neighboring gene protocadherin gamma subfamily A, 4 Neighboring gene protocadherin gamma subfamily B, 2 Neighboring gene protocadherin gamma subfamily A, 5 Neighboring gene protocadherin gamma subfamily A, 6 Neighboring gene protocadherin gamma subfamily A, 7 Neighboring gene protocadherin gamma subfamily B, 4 Neighboring gene protocadherin gamma subfamily A, 8 Neighboring gene protocadherin gamma subfamily B, 5 Neighboring gene protocadherin gamma subfamily A, 9 Neighboring gene protocadherin gamma subfamily A, 10 pseudogene Neighboring gene protocadherin gamma subfamily B, 6 Neighboring gene protocadherin gamma subfamily A, 11 Neighboring gene protocadherin gamma subfamily B, 7 Neighboring gene protocadherin gamma subfamily B, 8 pseudogene Neighboring gene protocadherin gamma subfamily B, 9 pseudogene Neighboring gene protocadherin gamma subfamily C, 3 Neighboring gene protocadherin gamma subfamily C, 4 Neighboring gene protocadherin gamma subfamily C, 5 Neighboring gene diaphanous related formin 1 Neighboring gene histone deacetylase 3

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
protocadherin gamma-A12
Names
PCDH-gamma-A12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082567.3NP_001076036.2  protocadherin gamma-A12

    Status: INFERRED

    Source sequence(s)
    NBAG03000228, NBAG03000455
    Related
    ENSPTRP00000029650.5, ENSPTRT00000032096.5
    Conserved Domains (4) summary
    cd11304
    Location:248345
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:32114
    Cadherin_2; Cadherin-like
    pfam15974
    Location:811907
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam16492
    Location:690774
    Cadherin_C_2; Cadherin cytoplasmic C-terminal

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036884.1 Reference Clint_PTRv2 Primary Assembly

    Range
    119609600..119691987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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