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Ildr2 immunoglobulin-like domain containing receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 100039795, updated on 22-Aug-2021

Summary

Official Symbol
Ildr2provided by MGI
Official Full Name
immunoglobulin-like domain containing receptor 2provided by MGI
Primary source
MGI:MGI:1196370
See related
Ensembl:ENSMUSG00000040612
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ll; Dbsm; Dbsm1; AI852300; D1Ertd471; D1Ertd471e; 2810478N18Rik; 3110063L10Rik
Expression
Biased expression in frontal lobe adult (RPKM 9.1), cortex adult (RPKM 6.7) and 12 other tissues See more
Orthologs
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Genomic context

See Ildr2 in Genome Data Viewer
Location:
1 H2.3; 1 73.61 cM
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (166081630..166144405)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (166254060..166316832)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (168184270..168246963)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene glycoprotein A33 (transmembrane) Neighboring gene maelstrom spermatogenic transposon silencer Neighboring gene transcriptional adaptor 1 Neighboring gene pogo transposable element with KRAB domain Neighboring gene ubiquinol-cytochrome c reductase subunit pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
immunoglobulin-like domain-containing receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164528.1NP_001158000.1  immunoglobulin-like domain-containing receptor 2 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001158000.1

    Status: VALIDATED

    Source sequence(s)
    AC034122
    Consensus CDS
    CCDS48431.1
    UniProtKB/Swiss-Prot
    B5TVM2
    Related
    ENSMUSP00000107047.2, ENSMUST00000111416.7
    Conserved Domains (2) summary
    pfam05624
    Location:201227
    LSR; Lipolysis stimulated receptor (LSR)
    cl11960
    Location:49182
    Ig; Immunoglobulin domain
  2. NM_001357428.1NP_001344357.1  immunoglobulin-like domain-containing receptor 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC034122
    Consensus CDS
    CCDS87913.1
    Related
    ENSMUSP00000142152.2, ENSMUST00000194964.6
    Conserved Domains (1) summary
    pfam05624
    Location:201227
    LSR; Lipolysis stimulated receptor (LSR)
  3. NM_001357429.1NP_001344358.1  immunoglobulin-like domain-containing receptor 2 isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC034122
    Consensus CDS
    CCDS87916.1
    Related
    ENSMUSP00000141502.2, ENSMUST00000192732.6
  4. NM_001357430.1NP_001344359.1  immunoglobulin-like domain-containing receptor 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC034122
    Consensus CDS
    CCDS87915.1
    Related
    ENSMUSP00000142311.2, ENSMUST00000192638.6
    Conserved Domains (1) summary
    pfam05624
    Location:182208
    LSR; Lipolysis stimulated receptor (LSR)
  5. NM_001357431.1NP_001344360.1  immunoglobulin-like domain-containing receptor 2 isoform 5 precursor

    Status: VALIDATED

    Source sequence(s)
    AC034122
    Consensus CDS
    CCDS87914.1
    Related
    ENSMUSP00000141323.2, ENSMUST00000193860.2
    Conserved Domains (1) summary
    cl11960
    Location:132181
    Ig; Immunoglobulin domain
  6. NM_001357432.1NP_001344361.1  immunoglobulin-like domain-containing receptor 2 isoform 6 precursor

    Status: VALIDATED

    Source sequence(s)
    AC034122
    Consensus CDS
    CCDS87912.1
    Related
    ENSMUSP00000142240.2, ENSMUST00000195557.6
    Conserved Domains (2) summary
    pfam05624
    Location:201227
    LSR; Lipolysis stimulated receptor (LSR)
    cl11960
    Location:49182
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    166081630..166144405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036164352.1XP_036020245.1  immunoglobulin-like domain-containing receptor 2 isoform X2

    Conserved Domains (1) summary
    cl11960
    Location:51181
    Ig; Immunoglobulin domain
  2. XM_011238731.3XP_011237033.1  immunoglobulin-like domain-containing receptor 2 isoform X3

    Conserved Domains (1) summary
    cl11960
    Location:132181
    Ig; Immunoglobulin domain
  3. XM_006496594.5XP_006496657.1  immunoglobulin-like domain-containing receptor 2 isoform X1

    Conserved Domains (2) summary
    pfam05624
    Location:170196
    LSR; Lipolysis stimulated receptor (LSR)
    cl11960
    Location:101150
    Ig; Immunoglobulin domain
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