Rhox2e reproductive homeobox 2E [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Rhox2eprovided by MGI
Official Full Name: reproductive homeobox 2Eprovided by MGI
Primary source: MGI:MGI:3770272
See related: Ensembl:ENSMUSG00000096788 AllianceGenome:MGI:3770272
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Rhox2d; Rhox2.5
Annotation information: Note: This gene was previously named "Rhox2d" by MacLean, et. al. Genesis (2006) 44:122 (PubMed ID: 16496311) and "Rhox2.5" by Morris, et. al. Mamm. Genome (2006) 17:178 (PubMed ID: 16465597). Its official nomenclature is now Rhox2e. [07 Jan 2013]
Expression: Low expression observed in reference dataset See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: X A3.3; X 21.83 cM

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (36711975..36723462)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (37530322..37541809)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

Go to the top of the page Help

Preferred Names: reproductive homeobox 2E

Names: reproductive homeobox 2D

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001085348.1 → NP_001078817.1 reproductive homeobox 2E

See identical proteins and their annotated locations for NP_001078817.1

Status: VALIDATED

Source sequence(s)

AL808133

Consensus CDS

CCDS53055.1

UniProtKB/TrEMBL

Q9D4Y3, V9GXL3

Related

ENSMUSP00000072030.4, ENSMUST00000072167.10

Conserved Domains (1) summary

cd00086
Location:134 → 186

homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000086.8 Reference GRCm39 C57BL/6J

Range

36711975..36723462

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006541418.4 → XP_006541481.1 reproductive homeobox 2E isoform X1

See identical proteins and their annotated locations for XP_006541481.1

UniProtKB/TrEMBL

G3UYY0, V9GXL3

Related

ENSMUSP00000139210.2, ENSMUST00000184746.2

Conserved Domains (1) summary

cd00086
Location:134 → 181

homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
XM_036161745.1 → XP_036017638.1 reproductive homeobox 2E isoform X1

UniProtKB/TrEMBL

G3UYY0, V9GXL3

Conserved Domains (1) summary

cd00086
Location:134 → 181

homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.