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Potefam3a POTE ankyrin domain family member 3A [ Mus musculus (house mouse) ]

Gene ID: 100040599, updated on 28-Sep-2021

Summary

Official Symbol
Potefam3aprovided by MGI
Official Full Name
POTE ankyrin domain family member 3Aprovided by MGI
Primary source
MGI:MGI:3796981
See related
Ensembl:ENSMUSG00000074449
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Poteb; Pote3a; Gm15319
Expression
Biased expression in testis adult (RPKM 19.4) and frontal lobe adult (RPKM 0.7) See more
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Genomic context

See Potefam3a in Genome Data Viewer
Location:
8; 8 A1.3
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20078078..20103616)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20337664..20363202, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (19933242..19958780, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cadherin 11 pseudogene Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene ribosomal protein S7 pseudogene Neighboring gene cadherin 11 pseudogene Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene predicted gene, 40468

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC183705

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
testis-specific gene with ankyrin repeats and PEST domain-like
Names
POTE ankyrin domain family member B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177408.1NP_001170879.1  testis-specific gene with ankyrin repeats and PEST domain-like

    Status: VALIDATED

    Source sequence(s)
    AC152164
    Consensus CDS
    CCDS52499.1
    UniProtKB/TrEMBL
    E9Q637
    Related
    ENSMUSP00000081059.6, ENSMUST00000084046.6
    Conserved Domains (4) summary
    cd00204
    Location:79203
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:89180
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:54105
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:86115
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    20078078..20103616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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