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Gm10340 predicted gene 10340 [ Mus musculus (house mouse) ]

Gene ID: 100040697, updated on 3-Apr-2024

Summary

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Official Symbol
Gm10340provided by MGI
Official Full Name
predicted gene 10340provided by MGI
Primary source
MGI:MGI:3641969
See related
AllianceGenome:MGI:3641969
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in alimentary system; cochlear duct; ganglia; rib; and smooth muscle tissue. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
14 A2; 14 1.66 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (19329220..19339120, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (3130653..3140553)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA D830030K20 gene Neighboring gene predicted gene 17222 Neighboring gene predicted gene 5795 Neighboring gene STARR-seq mESC enhancer starr_35806 Neighboring gene predicted gene 2897 Neighboring gene esterase D/formylglutathione hydrolase, pseudogene Neighboring gene predicted gene 2888

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
predicted gene 10340; uncharacterized protein Gm10340
Names
alpha15-takusan
alpha17-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    19329220..19339120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011244803.2 → XP_011243105.1  uncharacterized protein Gm10340

    UniProtKB/TrEMBL
    A0AA74KT48
    Conserved Domains (1) summary
    pfam04822
    Location:61 → 141
    Takusan
Nucleotide Protein Strain
Heading Accession and Version

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