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Spin2-ps4 spindlin family, member 2, pseudogene 4 [ Mus musculus (house mouse) ]

Gene ID: 100041642, updated on 8-Feb-2024

Summary

Official Symbol
Spin2-ps4provided by MGI
Official Full Name
spindlin family, member 2, pseudogene 4provided by MGI
Primary source
MGI:MGI:3645574
See related
AllianceGenome:MGI:3645574
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16388; EG546323
Expression
Restricted expression toward testis adult (RPKM 1.3) See more
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Genomic context

Location:
X A7.3; X 38.1 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (73933218..73935046, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (74889605..74891308, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 39521 Neighboring gene predicted gene, 54058 Neighboring gene STARR-seq mESC enhancer starr_47374 Neighboring gene X-linked lymphocyte-regulated 3E, pseudogene Neighboring gene STARR-seq mESC enhancer starr_47375 Neighboring gene X-linked lymphocyte-regulated 4E, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Other Names

  • predicted pseudogene 16388

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables methylated histone binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_148717.1 

    Range
    101..1929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    73933218..73935046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)