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Gm3500 predicted gene 3500 [ Mus musculus (house mouse) ]

Gene ID: 100041678, updated on 8-Feb-2024

Summary

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Official Symbol
Gm3500provided by MGI
Official Full Name
predicted gene 3500provided by MGI
Primary source
MGI:MGI:3781677
See related
Ensembl:ENSMUSG00000096003 AllianceGenome:MGI:3781677
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm3401; 100041758
Expression
Biased expression in CNS E18 (RPKM 3.1), whole brain E14.5 (RPKM 1.9) and 12 other tissues See more
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Genomic context

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Location:
14 A2; 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (17080554..17103981)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (5365792..5389718, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3194 Neighboring gene predicted gene, 41087 Neighboring gene predicted gene, 53829 Neighboring gene predicted gene 3348 Neighboring gene predicted gene 3542 Neighboring gene predicted gene 3339

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
predicted gene 3468
Names
alpha11-takusan
alpha12-takusan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256886.1 → NP_001243815.1  predicted gene 3468

    See identical proteins and their annotated locations for NP_001243815.1

    Status: VALIDATED

    Source sequence(s)
    AC125198
    Consensus CDS
    CCDS56924.1
    UniProtKB/TrEMBL
    A6NAS6, A6NAS7
    Related
    ENSMUSP00000137355.2, ENSMUST00000177986.8
    Conserved Domains (1) summary
    pfam04822
    Location:50 → 125
    Takusan; Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    17080554..17103981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158315.1 → XP_036014208.1  predicted gene 3468 isoform X1

  2. XM_036158317.1 → XP_036014210.1  predicted gene 3468 isoform X1

  3. XM_036158316.1 → XP_036014209.1  predicted gene 3468 isoform X1

  4. XM_036158313.1 → XP_036014206.1  predicted gene 3468 isoform X1

  5. XM_036158314.1 → XP_036014207.1  predicted gene 3468 isoform X1

  6. XM_036158312.1 → XP_036014205.1  predicted gene 3468 isoform X1

RNA

  1. XR_004938347.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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