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Cd300ld5 CD300 molecule like family member D5 [ Mus musculus (house mouse) ]

Gene ID: 100043125, updated on 8-Feb-2024

Summary

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Official Symbol
Cd300ld5provided by MGI
Official Full Name
CD300 molecule like family member D5provided by MGI
Primary source
MGI:MGI:3702661
See related
Ensembl:ENSMUSG00000089722 AllianceGenome:MGI:3702661
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm11711
Summary
Orthologous to human CD300LD (CD300 molecule like family member d). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in mammary gland adult (RPKM 45.7), subcutaneous fat pad adult (RPKM 23.6) and 11 other tissues See more
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Genomic context

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See Cd300ld5 in Genome Data Viewer
Location:
11 E2; 11 80.57 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (114922273..114928605, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115031447..115037780, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene CD300C molecule 2 Neighboring gene CD300 molecule like family member D4 Neighboring gene CD300 molecule like family member D2 Neighboring gene CD300 molecule like family member D3 Neighboring gene STARR-seq mESC enhancer starr_31142 Neighboring gene CD300E molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
CD300 molecule like family member D5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101657.2 → NP_001095127.1  CD300 molecule like family member D5 precursor

    See identical proteins and their annotated locations for NP_001095127.1

    Status: VALIDATED

    Source sequence(s)
    AL607025
    Consensus CDS
    CCDS36369.1
    UniProtKB/TrEMBL
    A2A7W0, A2A7W1, D3Z6G8, D3Z6G9
    Related
    ENSMUSP00000097810.3, ENSMUST00000100239.3
    Conserved Domains (2) summary
    cd05716
    Location:27 → 124
    Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
    smart00410
    Location:25 → 125
    IG_like; Immunoglobulin like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    114922273..114928605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006531880.5 → XP_006531943.1  CD300 molecule like family member D5 isoform X1

    See identical proteins and their annotated locations for XP_006531943.1

    Conserved Domains (1) summary
    cd05716
    Location:27 → 124
    Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains
Nucleotide Protein
Heading Accession and Version

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