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Ankrd66 ankyrin repeat domain 66 [ Mus musculus (house mouse) ]

Gene ID: 100043332, updated on 16-Apr-2024

Summary

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Official Symbol
Ankrd66provided by MGI
Official Full Name
ankyrin repeat domain 66provided by MGI
Primary source
MGI:MGI:1925106
See related
Ensembl:ENSMUSG00000096140 AllianceGenome:MGI:1925106
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4368; D730048J04Rik
Summary
Orthologous to human ANKRD66 (ankyrin repeat domain 66). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
17 B3; 17
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (43845064..43862178, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (43534173..43551281, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor F5 Neighboring gene predicted gene, 25135 Neighboring gene STARR-seq mESC enhancer starr_42593 Neighboring gene STARR-seq mESC enhancer starr_42594 Neighboring gene meprin 1 alpha Neighboring gene STARR-seq mESC enhancer starr_42596 Neighboring gene RIKEN cDNA 1700071M16 gene Neighboring gene phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) Neighboring gene STARR-seq mESC enhancer starr_42598 Neighboring gene tudor domain containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long noncoding RNAs expression profile of the developing mouse heart. Zhu JG, et al. J Cell Biochem, 2014 May. PMID 24375461
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 66

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254953.2 → NP_001241882.1  ankyrin repeat domain-containing protein 66

    See identical proteins and their annotated locations for NP_001241882.1

    Status: VALIDATED

    Source sequence(s)
    CT010585
    Consensus CDS
    CCDS57095.1
    UniProtKB/TrEMBL
    J3QNN4
    Related
    ENSMUSP00000136879.2, ENSMUST00000178772.3
    Conserved Domains (3) summary
    COG0666
    Location:24 → 187
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:10 → 39
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:12 → 96
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_001404112.1 → NP_001391041.1  ankyrin repeat domain-containing protein 66

    Status: VALIDATED

    Source sequence(s)
    CT010585
    UniProtKB/TrEMBL
    J3QNN4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    43845064..43862178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006523378.2 → XP_006523441.1  ankyrin repeat domain-containing protein 66 isoform X1

    See identical proteins and their annotated locations for XP_006523441.1

    UniProtKB/TrEMBL
    J3QNN4
    Conserved Domains (3) summary
    COG0666
    Location:24 → 187
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:10 → 39
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:12 → 96
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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