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Zfp955b zinc finger protein 955B [ Mus musculus (house mouse) ]

Gene ID: 100043468, updated on 8-Feb-2024

Summary

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Official Symbol
Zfp955bprovided by MGI
Official Full Name
zinc finger protein 955Bprovided by MGI
Primary source
MGI:MGI:4834573
See related
Ensembl:ENSMUSG00000096910 AllianceGenome:MGI:4834573
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm4455; Zfp883b; A430003O12Rik; C430039G02Rik; C530035A18Rik
Summary
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 4.8), CNS E14 (RPKM 4.2) and 24 other tissues See more
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Genomic context

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See Zfp955b in Genome Data Viewer
Location:
17 B1; 17 17.98 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (33508495..33526213)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (33289521..33307239)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 955A Neighboring gene STARR-positive B cell enhancer mm9_chr17:33391968-33392269 Neighboring gene olfactory receptor family 10 subfamily H member 28 Neighboring gene STARR-positive B cell enhancer mm9_chr17:33426236-33426537 Neighboring gene zinc finger protein 422, pseudogene Neighboring gene zinc finger protein 81 Neighboring gene STARR-positive B cell enhancer mm9_chr17:33495732-33496033 Neighboring gene zinc finger protein 101

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 422, related sequence 1-like
Names
zinc finger protein 883B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142957.1 → NP_001136429.1  zinc finger protein 422, related sequence 1-like

    Status: VALIDATED

    Source sequence(s)
    AK021244, CT033756, CT485619
    Consensus CDS
    CCDS50067.1
    UniProtKB/TrEMBL
    L7N232
    Related
    ENSMUSP00000097011.4, ENSMUST00000099414.5
    Conserved Domains (5) summary
    smart00349
    Location:10 → 50
    KRAB; krueppel associated box
    COG5048
    Location:402 → 544
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:376 → 396
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:10 → 49
    KRAB; KRAB box
    pfam13465
    Location:500 → 525
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    33508495..33526213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249402.1 → XP_030105262.1  zinc finger protein 422, related sequence 1-like isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:317 → 460
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:376 → 396
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:9 → 50
    KRAB; KRAB box

  2. XM_030249401.1 → XP_030105261.1  zinc finger protein 422, related sequence 1-like isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:370 → 512
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:344 → 364
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:9 → 50
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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