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GPNMB glycoprotein nmb [ Sus scrofa (pig) ]

Gene ID: 100049669, updated on 8-Mar-2024

Summary

Official Symbol
GPNMBprovided by VGNC
Official Full Name
glycoprotein nmbprovided by VGNC
Primary source
VGNC:VGNC:88593
See related
Ensembl:ENSSSCG00000032241
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in lung (RPKM 101.3), kidney (RPKM 55.0) and 4 other tissues See more
Orthologs
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Genomic context

Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (92037428..92071501)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003539743.1 (201..514)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene nucleoporin 42 Neighboring gene uncharacterized LOC102162436 Neighboring gene uncharacterized LOC110255489 Neighboring gene mitochondrial assembly of ribosomal large subunit 1 Neighboring gene insulin like growth factor 2 mRNA binding protein 3

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
transmembrane glycoprotein NMB
Names
glycoprotein (transmembrane) nmb

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098584.1NP_001092054.1  transmembrane glycoprotein NMB precursor

    See identical proteins and their annotated locations for NP_001092054.1

    Status: PROVISIONAL

    Source sequence(s)
    AB271936
    UniProtKB/TrEMBL
    A0A0B8S077, A0A4X1T4E9, A0A8D0IE98, A0A8D1TXA8, A5A766
    Related
    ENSSSCP00000031610.2, ENSSSCT00000039354.3
    Conserved Domains (1) summary
    cd00146
    Location:260313
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    92037428..92071501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101920.1XP_020957579.1  transmembrane glycoprotein NMB isoform X3

    UniProtKB/TrEMBL
    A0A8D0IE98, A0A8D1TXA8
    Conserved Domains (2) summary
    TIGR00864
    Location:229344
    PCC; polycystin cation channel protein
    cd00146
    Location:260313
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
  2. XM_021101919.1XP_020957578.1  transmembrane glycoprotein NMB isoform X2

    UniProtKB/TrEMBL
    A0A8D0IE98, A0A8D1TXA8
    Conserved Domains (2) summary
    TIGR00864
    Location:193308
    PCC; polycystin cation channel protein
    cd00146
    Location:224277
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
  3. XM_021101918.1XP_020957577.1  transmembrane glycoprotein NMB isoform X1

    UniProtKB/TrEMBL
    A0A287AME8, A0A4X1T4F5, A0A8D0QEP0, A0A8D1Q1Q4
    Related
    ENSSSCP00000045084.1, ENSSSCT00000041855.1
    Conserved Domains (2) summary
    TIGR00864
    Location:220335
    PCC; polycystin cation channel protein
    cd00146
    Location:251304
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...