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gpsm1 G-protein signaling modulator 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100125000, updated on 8-Mar-2024

Summary

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Official Symbol
gpsm1provided by Xenbase
Official Full Name
G-protein signaling modulator 1provided by Xenbase
Primary source
Xenbase:XB-GENE-1011970
See related
Ensembl:ENSXETG00000000733
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ags3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (6321115..6391351)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (81720333..81787755)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene quiescin sulfhydryl oxidase 2 Neighboring gene coiled-coil domain containing 187 Neighboring gene DNL-type zinc finger Neighboring gene caspase recruitment domain family member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTPase regulator activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
G-protein-signaling modulator 1
Names
G-protein signaling modulator 1 (AGS3-like)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102928.1 → NP_001096398.1  G-protein-signaling modulator 1

    See identical proteins and their annotated locations for NP_001096398.1

    Status: PROVISIONAL

    Source sequence(s)
    BC136024
    UniProtKB/TrEMBL
    A0A803J8E5, A4III0
    Conserved Domains (4) summary
    COG0457
    Location:66 → 316
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:204 → 231
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:204 → 275
    TPR_12; Tetratricopeptide repeat
    pfam02188
    Location:482 → 501
    GoLoco; GoLoco motif

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    6321115..6391351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031906851.1 → XP_031762711.1  G-protein-signaling modulator 1 isoform X1

    UniProtKB/TrEMBL
    A0A803J8E5, F7D4Z1
    Related
    ENSXETP00000119298.1, ENSXETT00000106060.1
    Conserved Domains (4) summary
    COG0457
    Location:66 → 316
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:204 → 231
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:204 → 275
    TPR_12; Tetratricopeptide repeat
    pfam02188
    Location:585 → 604
    GoLoco; GoLoco motif

  2. XM_031906850.1 → XP_031762710.1  G-protein-signaling modulator 1 isoform X1

    UniProtKB/TrEMBL
    A0A803J8E5, F7D4Z1
    Related
    ENSXETP00000106940.1, ENSXETT00000116074.1
    Conserved Domains (4) summary
    COG0457
    Location:66 → 316
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:204 → 231
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:204 → 275
    TPR_12; Tetratricopeptide repeat
    pfam02188
    Location:585 → 604
    GoLoco; GoLoco motif

  3. XM_031906852.1 → XP_031762712.1  G-protein-signaling modulator 1 isoform X2

    UniProtKB/TrEMBL
    A0A803J8E5, A0A803KCL7
    Related
    ENSXETP00000117989.1, ENSXETT00000120747.1
    Conserved Domains (4) summary
    COG0457
    Location:46 → 296
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:184 → 211
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:184 → 255
    TPR_12; Tetratricopeptide repeat
    pfam02188
    Location:565 → 584
    GoLoco; GoLoco motif

  4. XM_031906853.1 → XP_031762713.1  G-protein-signaling modulator 1 isoform X3

    UniProtKB/TrEMBL
    A0A8J1JXU4
    Conserved Domains (4) summary
    COG0457
    Location:16 → 192
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:41 → 68
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:41 → 112
    TPR_12; Tetratricopeptide repeat
    pfam02188
    Location:422 → 441
    GoLoco; GoLoco motif

  5. XM_031906854.1 → XP_031762714.1  G-protein-signaling modulator 1 isoform X4

    UniProtKB/TrEMBL
    A0A8J1JXT8
    Conserved Domains (1) summary
    pfam02188
    Location:181 → 200
    GoLoco; GoLoco motif

  6. XM_031906855.1 → XP_031762715.1  G-protein-signaling modulator 1 isoform X5

    UniProtKB/TrEMBL
    A0A8J1K0H1
    Conserved Domains (1) summary
    pfam02188
    Location:90 → 109
    GoLoco; GoLoco motif
Nucleotide Protein Strain
Heading Accession and Version

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