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pnoc prepronociceptin [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127724, updated on 8-Mar-2024

Summary

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Official Symbol
pnocprovided by Xenbase
Official Full Name
prepronociceptinprovided by Xenbase
Primary source
Xenbase:XB-GENE-877024
See related
Ensembl:ENSXETG00000021158
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ppnoc
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (152369562..152422547)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683402.1 (654827..703652)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116411099 Neighboring gene serine/threonine kinase 35 Neighboring gene uncharacterized LOC116410796 Neighboring gene zinc finger protein 395

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables opioid peptide activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within neuropeptide signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
prepronociceptin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113063.1 → NP_001106534.1  prepronociceptin precursor

    See identical proteins and their annotated locations for NP_001106534.1

    Status: PROVISIONAL

    Source sequence(s)
    BC154903
    UniProtKB/TrEMBL
    A0A6I8R3T2, A8WGY6
    Related
    ENSXETP00000045744.4, ENSXETT00000045744.5
    Conserved Domains (1) summary
    pfam01160
    Location:20 → 64
    Opiods_neuropep; Vertebrate endogenous opioids neuropeptide

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    152369562..152422547
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031901483.1 → XP_031757343.1  prepronociceptin isoform X1

    UniProtKB/TrEMBL
    A0A6I8R3T2, F7CDP5
    Conserved Domains (1) summary
    pfam01160
    Location:21 → 65
    Opiods_neuropep; Vertebrate endogenous opioids neuropeptide
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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