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LINC00476 long intergenic non-protein coding RNA 476 [ Homo sapiens (human) ]

Gene ID: 100128782, updated on 11-Jun-2021

Summary

Official Symbol
LINC00476provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 476provided by HGNC
Primary source
HGNC:HGNC:27858
See related
Ensembl:ENSG00000175611
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NAG11; NAG12; C9orf130
Expression
Ubiquitous expression in prostate (RPKM 1.4), ovary (RPKM 1.4) and 25 other tissues See more
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Genomic context

See LINC00476 in Genome Data Viewer
Location:
9q22.32
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (95806088..95875977, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98568370..98638259, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene proteasome subunit alpha 7 pseudogene 1 Neighboring gene uncharacterized LOC112268049 Neighboring gene uncharacterized LOC105376161 Neighboring gene uncharacterized LOC107987103 Neighboring gene Sharpr-MPRA regulatory region 6609 Neighboring gene RNA, U2 small nuclear 46, pseudogene Neighboring gene ERCC excision repair 6 like 2 Neighboring gene RNA, 5S ribosomal pseudogene 289 Neighboring gene PARK7 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • nasopharyngeal carcinoma-associated gene 12

Clone Names

  • FLJ34818, FLJ34826

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_023389.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at its 5' end, and includes alternate exon structure at its 3' end, compared to variant 1.
    Source sequence(s)
    AF194971, AL389954
    Related
    ENST00000321517.3
  2. NR_023390.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK092137, AK092145, AL354861, AL389954, BU687794

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    95806088..95875977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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