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FAM236A family with sequence similarity 236 member A [ Homo sapiens (human) ]

Gene ID: 100129407, updated on 10-Oct-2023

Summary

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Official Symbol
FAM236Aprovided by HGNC
Official Full Name
family with sequence similarity 236 member Aprovided by HGNC
Primary source
HGNC:HGNC:44268
See related
Ensembl:ENSG00000275520 AllianceGenome:HGNC:44268
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00684; DMRTC1-AS1
Expression
Restricted expression toward testis (RPKM 50.5) See more
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Genomic context

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See FAM236A in Genome Data Viewer
Location:
Xq13.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (72938206..72938958)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (71371716..71372468)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (72158046..72158798)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene DMRT like family C1B Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72027355-72027855 Neighboring gene family with sequence similarity 236 member D Neighboring gene DMRT like family C1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72132634-72133134 Neighboring gene family with sequence similarity 236 member C Neighboring gene family with sequence similarity 226 member A Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72179367-72179868 Neighboring gene PABPC1L2B antisense RNA 1 (head to head)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

General protein information

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Preferred Names
protein FAM236A
Names
DMRTC1 antisense RNA 1 (non-protein coding)
family with sequence similarity 235 member A
long intergenic non-protein coding RNA 684

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001348070.2 → NP_001334999.1  protein FAM236A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC234776
    Consensus CDS
    CCDS87765.1
    UniProtKB/Swiss-Prot
    A0A1B0GUQ0, A0A1B0GV22
    Related
    ENSP00000490343.2, ENST00000611003.2

  2. NM_001348071.2 → NP_001335000.1  protein FAM236A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC234776
    Consensus CDS
    CCDS87766.1
    UniProtKB/TrEMBL
    A0A1X7SCG6
    Related
    ENSP00000490197.1, ENST00000593662.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    72938206..72938958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    71371716..71372468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_034116.1: Suppressed sequence

    Description
    NR_034116.1: This RefSeq was removed because it is now thought that this gene does encode a protein.

  2. NR_034117.1: Suppressed sequence

    Description
    NR_034117.1: This RefSeq was permanently suppressed because it was based on sequence from the wrong strand.

  3. NR_120499.1: Suppressed sequence

    Description
    NR_120499.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1B0GUQ0.2 GenPept UniProtKB/Swiss-Prot:A0A1B0GUQ0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials