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TEX13C TEX13 family member C [ Homo sapiens (human) ]

Gene ID: 100129520, updated on 8-Mar-2024

Summary

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Official Symbol
TEX13Cprovided by HGNC
Official Full Name
TEX13 family member Cprovided by HGNC
Primary source
HGNC:HGNC:52277
See related
Ensembl:ENSG00000282815 AllianceGenome:HGNC:52277
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 1.4) See more
Orthologs
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Genomic context

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See TEX13C in Genome Data Viewer
Location:
Xq25
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (125319871..125325214)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (123631873..123637216)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (124453720..124459063)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene teneurin transmembrane protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:124139686-124140186 Neighboring gene MPRA-validated peak7424 silencer Neighboring gene uncharacterized LOC124905211 Neighboring gene uncharacterized LOC124905212 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:124522665-124523229 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:124525724-124526468 Neighboring gene FBLIM1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative testis-expressed protein 13C
Names
testis expressed sequence 13-like
testis-expressed sequence 13C protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195272.2 → NP_001182201.1  putative testis-expressed protein 13C

    See identical proteins and their annotated locations for NP_001182201.1

    Status: VALIDATED

    Source sequence(s)
    AL627231
    Consensus CDS
    CCDS83488.1
    UniProtKB/Swiss-Prot
    A0A0J9YWL9
    Related
    ENSP00000512212.1, ENST00000695840.1
    Conserved Domains (3) summary
    smart00547
    Location:959 → 979
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:959 → 978
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam15186
    Location:5 → 148
    TEX13; Testis-expressed sequence 13 protein family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    125319871..125325214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    123631873..123637216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0J9YWL9.1 GenPept UniProtKB/Swiss-Prot:A0A0J9YWL9

Gene LinkOut

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