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COL4A2-AS2 COL4A2 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100129836, updated on 8-Mar-2024

Summary

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Official Symbol
COL4A2-AS2provided by HGNC
Official Full Name
COL4A2 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:39849
See related
Ensembl:ENSG00000224821 AllianceGenome:HGNC:39849
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in placenta (RPKM 2.5), fat (RPKM 0.7) and 10 other tissues See more
Orthologs
all
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Genomic context

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Location:
13q34
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (110456397..110463287, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (109686826..109693757, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (111108744..111115634, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene collagen type IV alpha 2 chain Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5501 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:110994550-110995499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:110995500-110996448 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110999397-111000255 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111005255-111005767 Neighboring gene microRNA 8073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111012706-111013206 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111013207-111013707 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111031805-111032755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111039396-111040260 Neighboring gene Sharpr-MPRA regulatory region 13414 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7993 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111098314-111098814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111098815-111099315 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:111100302-111101501 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111110079-111110888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111110889-111111697 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111122078-111122283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111125311-111125885 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111127041-111127679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7999 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111136580-111137418 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111137419-111138256 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111138257-111139094 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111139095-111139931 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111144038-111144573 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111144574-111145108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111151293-111151792 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111155195-111156124 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111159947-111160448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111160449-111160948 Neighboring gene COL4A2 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111164263-111164891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111166617-111167116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111170170-111171006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8003 Neighboring gene Sharpr-MPRA regulatory region 8993 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111183105-111183721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111186543-111187325 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5502 Neighboring gene RAB20, member RAS oncogene family Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111209741-111210264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111210265-111210787 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111213668-111213857

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

Other Names

  • COL4A2 antisense 2
  • COL4A2 antisense RNA 2 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171022.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL159153
    Related
    ENST00000458403.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    110456397..110463287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    109686826..109693757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001267044.1: Suppressed sequence

    Description
    NM_001267044.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

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