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LOC100132249 uncharacterized LOC100132249 [ Homo sapiens (human) ]

Gene ID: 100132249, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100132249
Gene description
uncharacterized LOC100132249
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
9q13
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (62834248..62838346, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (80343683..80347740)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (66490072..66494170, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 4 pseudogene 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:47049006-47049525 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:47049526-47050044 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28431 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66455492-66456238 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66456239-66456984 Neighboring gene uncharacterized LOC107987020 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66457043-66457922 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66457923-66458800 Neighboring gene long intergenic non-protein coding RNA 1410 Neighboring gene RNA, 5S ribosomal pseudogene 283 Neighboring gene OCT4 hESC enhancer GRCh37_chr9:66464814-66465421 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66470759-66471281 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:66478631-66479190 Neighboring gene PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66486627-66487478 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66489090-66489619 Neighboring gene MPRA-validated peak7249 silencer Neighboring gene Sharpr-MPRA regulatory region 15656 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19925 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:66500322-66500855 Neighboring gene cyclin dependent kinase 2 associated protein 2 pseudogene 2 Neighboring gene prostaglandin E receptor 4 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. Oshikawa M, et al. Invest Ophthalmol Vis Sci, 2011 Aug 22. PMID 21697133

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Exosome-Transmitted lncRNA LOC100132249 Induces Endothelial Dysfunction in Diabetic Retinopathy.
    Title: The Exosome-Transmitted lncRNA LOC100132249 Induces Endothelial Dysfunction in Diabetic Retinopathy.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135128.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL512625

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    62834248..62838346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    80343683..80347740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials