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PRR23D2 proline rich 23 domain containing 2 [ Homo sapiens (human) ]

Gene ID: 100133251, updated on 8-Nov-2023

Summary

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Official Symbol
PRR23D2provided by HGNC
Official Full Name
proline rich 23 domain containing 2provided by HGNC
Primary source
HGNC:HGNC:49396
See related
Ensembl:ENSG00000255378 AllianceGenome:HGNC:49396
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRR23D1
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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Location:
8p23.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (7778591..7784165, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11924541..11930114, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (7636113..7638935, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene family with sequence similarity 90 member A9 Neighboring gene family with sequence similarity 90 member A10 Neighboring gene proline rich 23 domain containing 3, pseudogene Neighboring gene defensin beta 107A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  2. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
proline-rich protein 23D2
Names
Proline-rich protein 23D1
proline-rich protein 23C-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282478.1 → NP_001269407.1  proline-rich protein 23D2

    See identical proteins and their annotated locations for NP_001269407.1

    Status: VALIDATED

    Source sequence(s)
    AC084121, CN273434
    Consensus CDS
    CCDS64821.1
    UniProtKB/Swiss-Prot
    E9PI22, P0DMB1
    Related
    ENSP00000436580.1, ENST00000528972.1
    Conserved Domains (1) summary
    pfam10630
    Location:33 → 276
    DUF2476; Protein of unknown function (DUF2476)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    7778591..7784165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011543811.3 → XP_011542113.1  proline-rich protein 23D2 isoform X1

    See identical proteins and their annotated locations for XP_011542113.1

    UniProtKB/Swiss-Prot
    E9PI22, P0DMB1
    Conserved Domains (1) summary
    pfam10630
    Location:33 → 276
    DUF2476; Protein of unknown function (DUF2476)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    676902..682673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054332232.1 → XP_054188207.1  proline-rich protein 23D2 isoform X1

    UniProtKB/Swiss-Prot
    E9PI22, P0DMB1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11924541..11930114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054359525.1 → XP_054215500.1  proline-rich protein 23D2 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DMB1.1 GenPept UniProtKB/Swiss-Prot:P0DMB1

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