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trp-i trypsin I [ Salmo salar (Atlantic salmon) ]

Gene ID: 100137021, updated on 30-Nov-2023

Summary

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Gene symbol
trp-i
Gene description
trypsin I
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
TRY1
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Genomic context

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See trp-i in Genome Data Viewer
Location:
chromosome: ssa05
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (69913309..69915231, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012357272.1 (7550..8447, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012376002.1 (213..978, complement)

Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene interferon-inducible GTPase 5-like Neighboring gene trypsin-1-like Neighboring gene trypsin-1-like Neighboring gene trypsin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure determination and refinement of benzamidine-inhibited trypsin from the North Atlantic salmon (Salmo salar) at 1.82 A resolution. Smalås A, et al. Acta Crystallogr D Biol Crystallogr, 1993 May 1. PMID 15299521
  2. Cold adaption of enzymes: structural comparison between salmon and bovine trypsins. Smalås AO, et al. Proteins, 1994 Oct. PMID 7846025
  3. Molecular cloning and characterization of anionic and cationic variants of trypsin from Atlantic salmon. Male R, et al. Eur J Biochem, 1995 Sep 1. PMID 7556223
  4. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trypsin-1
NP_001119704.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126232.1 → NP_001119704.1  trypsin-1 precursor

    See identical proteins and their annotated locations for NP_001119704.1

    Status: PROVISIONAL

    Source sequence(s)
    X70075
    UniProtKB/Swiss-Prot
    P35031
    UniProtKB/TrEMBL
    A0A1S2X2M3, B5X8T3
    Conserved Domains (2) summary
    smart00020
    Location:20 → 234
    Tryp_SPc; Trypsin-like serine protease
    cd00190
    Location:21 → 238
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059446.1 Reference Ssal_v3.1

    Range
    69913309..69915231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases