hbl4 hexose-binding lectin 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hbl4provided by ZNC
Official Full Name: hexose-binding lectin 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-070912-287
See related: Ensembl:ENSDARG00000054202 AllianceGenome:ZFIN:ZDB-GENE-070912-287
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-284o19.5
Summary: Predicted to be part of collagen trimer. Predicted to be active in extracellular space; multivesicular body; and rough endoplasmic reticulum. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 2

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (37879812..37883220, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (37897355..37900763, complement)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
part_of collagen trimer	IEA Inferred from Electronic Annotation more info
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info
is_active_in multivesicular body	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: hexose-binding lectin 4

Names: chemokine CCL-C24c

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114725.1 → NP_001108197.1 hexose-binding lectin 4 precursor

See identical proteins and their annotated locations for NP_001108197.1

Status: PROVISIONAL

Source sequence(s)

BC155073

UniProtKB/TrEMBL

A9JSU1

Related

ENSDARP00000037076.7, ENSDART00000035685.8

Conserved Domains (2) summary

cd03591
Location:131 → 245

CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)

pfam01391
Location:33 → 92

Collagen; Collagen triple helix repeat (20 copies)