col1a1a collagen, type I, alpha 1a [Oryzias latipes (Japanese medaka)] - Gene

Summary

Gene symbol: col1a1a
Gene description: collagen, type I, alpha 1a
See related: EnsemblRapid:ENSORLG00000017013
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryzias latipes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as: col1
Orthologs: zebrafish all
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Genomic context

Location:: chromosome: 8

Exon count:: 49

Annotation release	Status	Assembly	Chr	Location
103	current	ASM223467v1 (GCF_002234675.1)	8	NC_019866.2 (23938046..23957045, complement)
102	previous assembly	ASM31367v1 (GCF_000313675.1)	8	NC_019866.1 (24212447..24230573, complement)

Chromosome 8 - NC_019866.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The current results strongly suggest that collagen type I is synthesized by theca cells and is localized in the same cell layer of the follicles.
Title: Collagen type-I alpha1 chain mRNA is expressed in the follicle cells of the medaka ovary.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen, type I, alpha 1a

Names: collagen type I alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001122918.2 → NP_001116390.2 collagen, type I, alpha 1a precursor

Status: VALIDATED

Source sequence(s)

AB280535, BJ733878, BJ735526, DC262902, DC266150, DC267580, DK102906, DK112768, DK113444

UniProtKB/TrEMBL

H2MRA6

Related

ENSORLP00000021285.1, ENSORLT00000021286.3

Conserved Domains (4) summary

pfam01391
Location:219 → 278

Collagen; Collagen triple helix repeat (20 copies)

pfam00093
Location:33 → 87

VWC; von Willebrand factor type C domain

pfam01410
Location:1212 → 1445

COLFI; Fibrillar collagen C-terminal domain

cl26386
Location:419 → 814

DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III