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col1a1a collagen, type I, alpha 1a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100144368, updated on 7-Jun-2022

Summary

Gene symbol
col1a1a
Gene description
collagen, type I, alpha 1a
See related
EnsemblRapid:ENSORLG00000017013
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
col1
Orthologs
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Genomic context

See col1a1a in Genome Data Viewer
Location:
chromosome: 8
Exon count:
49
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 8 NC_019866.2 (23938046..23957045, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 8 NC_019866.1 (24212447..24230573, complement)

Chromosome 8 - NC_019866.2Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor-binding protein complex acid labile subunit Neighboring gene peroxisomal biogenesis factor 12 Neighboring gene uncharacterized LOC111947788 Neighboring gene uncharacterized LOC111947715 Neighboring gene uncharacterized LOC105358359

Genomic regions, transcripts, and products

General protein information

Preferred Names
collagen, type I, alpha 1a
Names
collagen type I alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001122918.2NP_001116390.2  collagen, type I, alpha 1a precursor

    Status: VALIDATED

    Source sequence(s)
    AB280535, BJ733878, BJ735526, DC262902, DC266150, DC267580, DK102906, DK112768, DK113444
    Related
    ENSORLP00000021285.1, ENSORLT00000021286.3
    Conserved Domains (4) summary
    pfam01391
    Location:219278
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:3387
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:12121445
    COLFI; Fibrillar collagen C-terminal domain
    cl26386
    Location:419814
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019866.2 Reference ASM223467v1 Primary Assembly

    Range
    23938046..23957045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)