Format

Send to:

Choose Destination

tamalin trafficking regulator and scaffold protein tamalin [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145424, updated on 30-Sep-2021

Summary

Official Symbol
tamalinprovided by Xenbase
Official Full Name
trafficking regulator and scaffold protein tamalinprovided by Xenbase
Primary source
Xenbase:XB-GENE-943584
See related
EnsemblRapid:ENSXETG00000035527
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
grasp
Annotation information
Annotation category: partial on reference assembly
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See tamalin in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (135189794..135211251)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (131893831..131915312)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene activin A receptor like type 1 Neighboring gene activin A receptor type 1B Neighboring gene nuclear receptor subfamily 4 group A member 1 Neighboring gene pre-mRNA processing factor 40 homolog B

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
protein TAMALIN
Names
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126882.1NP_001120354.1  protein TAMALIN

    See identical proteins and their annotated locations for NP_001120354.1

    Status: PROVISIONAL

    Source sequence(s)
    BC160992
    UniProtKB/TrEMBL
    B1H2G6
    Related
    ENSXETP00000067489.1, ENSXETT00000083346.2
    Conserved Domains (1) summary
    cd00992
    Location:78163
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    135189794..135211251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center