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ctse cathepsin E [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145572, updated on 8-Mar-2024

Summary

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Official Symbol
ctseprovided by Xenbase
Official Full Name
cathepsin Eprovided by Xenbase
Primary source
Xenbase:XB-GENE-947864
See related
Ensembl:ENSXETG00000005932
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ce1; ce2; cate; ctse-a; ctse-b
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (73731562..73751116, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (65367814..65387352, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 (anion exchanger), member 9 Neighboring gene RAB7B, member RAS oncogene family Neighboring gene uncharacterized LOC116408686 Neighboring gene arginine vasopressin receptor 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cathepsin E
NP_001120469.1
XP_012811737.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126997.1 → NP_001120469.1  cathepsin E precursor

    See identical proteins and their annotated locations for NP_001120469.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161297
    UniProtKB/TrEMBL
    A0A6I8SNP2, B1H383, F7EHV9
    Related
    ENSXETP00000013055.3, ENSXETT00000013055.4
    Conserved Domains (2) summary
    pfam07966
    Location:17 → 42
    A1_Propeptide; A1 Propeptide
    cl11403
    Location:74 → 386
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    73731562..73751116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956283.2 → XP_012811737.1  cathepsin E isoform X1

    See identical proteins and their annotated locations for XP_012811737.1

    UniProtKB/TrEMBL
    A0A6I8SNP2, B1H383, F7EHV9
    Conserved Domains (2) summary
    pfam07966
    Location:17 → 42
    A1_Propeptide; A1 Propeptide
    cl11403
    Location:74 → 386
    pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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