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hao1 hydroxyacid oxidase (glycolate oxidase) 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145574, updated on 8-Mar-2024

Summary

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Official Symbol
hao1provided by Xenbase
Official Full Name
hydroxyacid oxidase (glycolate oxidase) 1provided by Xenbase
Primary source
Xenbase:XB-GENE-992668
See related
Ensembl:ENSXETG00000005520
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
26D10
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (25675963..25689755, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (21616891..21630634, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene FERM domain containing kindlin 1 Neighboring gene uncharacterized LOC105947449 Neighboring gene bone morphogenetic protein 2 Neighboring gene thioredoxin-related transmembrane protein 4 Neighboring gene phospholipase C beta 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables FMN binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
2-Hydroxyacid oxidase 1; hydroxyacid oxidase 1
NP_001120470.1
XP_012818193.1
XP_012818194.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126998.1 → NP_001120470.1  2-Hydroxyacid oxidase 1

    See identical proteins and their annotated locations for NP_001120470.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161299
    UniProtKB/TrEMBL
    B1H385
    Related
    ENSXETP00000077355.1, ENSXETT00000067462.2
    Conserved Domains (1) summary
    cd02809
    Location:9 → 178
    alpha_hydroxyacid_oxid_FMN; Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    25675963..25689755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012962740.3 → XP_012818194.1  hydroxyacid oxidase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8T1U5
    Related
    ENSXETP00000101306.2, ENSXETT00000103364.2
    Conserved Domains (1) summary
    pfam01070
    Location:16 → 361
    FMN_dh; FMN-dependent dehydrogenase

  2. XM_012962739.3 → XP_012818193.1  hydroxyacid oxidase 1 isoform X1

    UniProtKB/TrEMBL
    A0A7D9NJJ6
    Related
    ENSXETP00000012127.4, ENSXETT00000012127.5
    Conserved Domains (1) summary
    pfam01070
    Location:16 → 361
    FMN_dh; FMN-dependent dehydrogenase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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