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F13A1 coagulation factor XIII A chain [ Sus scrofa (pig) ]

Gene ID: 100153504, updated on 8-Mar-2024

Summary

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Official Symbol
F13A1provided by VGNC
Official Full Name
coagulation factor XIII A chainprovided by VGNC
Primary source
VGNC:VGNC:87858
See related
Ensembl:ENSSSCG00000024310
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 19.4), subcutaneous adipose (RPKM 13.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (3751290..3900797, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (3952957..4102446, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene phenylalanyl-tRNA synthetase 2, mitochondrial Neighboring gene neuritin 1 Neighboring gene microRNA mir-9841 Neighboring gene uncharacterized LOC110261765 Neighboring gene lymphocyte antigen 86

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-glutamine gamma-glutamyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in blood coagulation, fibrin clot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide cross-linking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coagulation factor XIII A chain
Names
coagulation factor XIII, A1 polypeptide

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    3751290..3900797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927630.7 → XP_001927665.3  coagulation factor XIII A chain

    See identical proteins and their annotated locations for XP_001927665.3

    UniProtKB/TrEMBL
    A0A4X1SKE4, A0A8D0MLE8, A0A8D0ZUY7, A0A8D1G0L8, A0A8D1Z442, K7GQL2
    Related
    ENSSSCP00000030183.1, ENSSSCT00000035671.4
    Conserved Domains (4) summary
    smart00460
    Location:312 → 403
    TGc; Transglutaminase/protease-like homologues
    COG1305
    Location:283 → 411
    YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
    pfam00868
    Location:50 → 167
    Transglut_N; Transglutaminase family
    pfam00927
    Location:522 → 626
    Transglut_C; Transglutaminase family, C-terminal ig like domain
Nucleotide Protein Strain
Heading Accession and Version

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