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SDS serine dehydratase [ Sus scrofa (pig) ]

Gene ID: 100155595, updated on 8-Mar-2024

Summary

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Official Symbol
SDSprovided by VGNC
Official Full Name
serine dehydrataseprovided by VGNC
Primary source
VGNC:VGNC:111141
See related
Ensembl:ENSSSCG00000036865
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 21.1), lung (RPKM 18.2) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SDS in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (38503922..38513908)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (40856187..40866181, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene LIM homeobox 5 Neighboring gene serine dehydratase like Neighboring gene phospholipase B domain containing 2 Neighboring gene deltex E3 ubiquitin ligase 1 Neighboring gene RAS protein activator like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-serine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables threonine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-serine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in threonine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-serine dehydratase/L-threonine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    38503922..38513908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928302.5 → XP_001928337.1  L-serine dehydratase/L-threonine deaminase

    See identical proteins and their annotated locations for XP_001928337.1

    UniProtKB/TrEMBL
    A0A4X1TL92, A0A8D0K8E1, A0A8D1EEB8, K9IVJ5
    Related
    ENSSSCP00000035551.1, ENSSSCT00000045583.3
    Conserved Domains (2) summary
    cd06448
    Location:11 → 320
    L-Ser-dehyd; Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
    pfam00291
    Location:6 → 304
    PALP; Pyridoxal-phosphate dependent enzyme
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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