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PVALB parvalbumin [ Sus scrofa (pig) ]

Gene ID: 100157265, updated on 8-Mar-2024

Summary

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Official Symbol
PVALBprovided by VGNC
Official Full Name
parvalbuminprovided by VGNC
Primary source
VGNC:VGNC:92007
See related
Ensembl:ENSSSCG00000000138
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
PVALB1
Expression
Biased expression in longissimus dorsi muscle (RPKM 31.4), psoas major muscle (RPKM 16.4) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (10953559..10973300)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (8553390..8573107)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene ciliary microtubule inner protein 4 Neighboring gene colony stimulating factor 2 receptor subunit beta Neighboring gene neutrophil cytosolic factor 4 Neighboring gene intraflagellar transport 27 Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Food allergy to chicken meat with IgE reactivity to muscle alpha-parvalbumin. Kuehn A, et al. Allergy, 2009 Oct. PMID 19772518
  2. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
parvalbumin alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190157.1 → NP_001177086.1  parvalbumin alpha

    See identical proteins and their annotated locations for NP_001177086.1

    Status: VALIDATED

    Source sequence(s)
    AY609522, BX915869, BX919484
    UniProtKB/TrEMBL
    C1L369, F1SKJ8
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    10953559..10973300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005663796.3 → XP_005663853.1  parvalbumin alpha isoform X2

    See identical proteins and their annotated locations for XP_005663853.1

    UniProtKB/TrEMBL
    C1L369, F1SKJ8
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin

  2. XM_021090960.1 → XP_020946619.1  parvalbumin alpha isoform X2

    UniProtKB/TrEMBL
    C1L369, F1SKJ8
    Conserved Domains (1) summary
    cd16254
    Location:9 → 109
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin

  3. XM_021090958.1 → XP_020946617.1  parvalbumin alpha isoform X1

    UniProtKB/TrEMBL
    A0A287ALJ2, A0A4X1U7A9, A0A8D0PX44, A0A8D1XPN9
    Related
    ENSSSCP00000044894.1, ENSSSCT00000063832.2
    Conserved Domains (1) summary
    cd16254
    Location:40 → 140
    EFh_parvalbumin_alpha; EF-hand, calcium binding motif, found in alpha-parvalbumin
Nucleotide Protein
Heading Accession and Version

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