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KRT4 keratin 4 [ Sus scrofa (pig) ]

Gene ID: 100157675, updated on 8-Mar-2024

Summary

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Official Symbol
KRT4provided by VGNC
Official Full Name
keratin 4provided by VGNC
Primary source
VGNC:VGNC:89591
See related
Ensembl:ENSSSCG00000024610
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in lung (RPKM 7.4) and mixtures (RPKM 1.2) See more
Orthologs
human all
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (18091742..18099086, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (18585174..18592517, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene keratin, type II cytoskeletal 3-like Neighboring gene keratin 3 Neighboring gene keratin 79 Neighboring gene keratin 78

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of skin epidermis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratinization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
keratin, type II cytoskeletal 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    18091742..18099086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927218.5 → XP_001927253.3  keratin, type II cytoskeletal 4

    UniProtKB/TrEMBL
    A0A8D0WF87, A0A8D1AFM2, A0A8D1GG03, A0A8D1JFV5, A0A8D1ZQ85
    Related
    ENSSSCP00000026418.4, ENSSSCT00000031030.4
    Conserved Domains (3) summary
    pfam00038
    Location:145 → 458
    Filament; Intermediate filament protein
    pfam16208
    Location:14 → 142
    Keratin_2_head; Keratin type II head
    cl23720
    Location:366 → 427
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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