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TRA-AGC15-1 tRNA-Ala (anticodon AGC) 15-1 [ Homo sapiens (human) ]

Gene ID: 100189117, updated on 10-Oct-2023

Summary

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Official Symbol
TRA-AGC15-1provided by HGNC
Official Full Name
tRNA-Ala (anticodon AGC) 15-1provided by HGNC
Primary source
HGNC:HGNC:34679
See related
AllianceGenome:HGNC:34679
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAA17
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Genomic context

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See TRA-AGC15-1 in Genome Data Viewer
Location:
14q31.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (88979098..88979170)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (83202758..83202830)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (89445442..89445514)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8844 Neighboring gene RNA, U4 small nuclear 92, pseudogene Neighboring gene tetratricopeptide repeat domain 8 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:89466718-89467917 Neighboring gene uncharacterized LOC124903356 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5995 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5996 Neighboring gene uncharacterized LOC105370615 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8845 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:89507294-89507850

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ala (AGC) 15-1
  • transfer RNA alanine 17 (anticodon AGC)
  • transfer RNA-Ala (AGC) 15-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    88979098..88979170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    83202758..83202830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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