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TRL-CAG2-1 tRNA-Leu (anticodon CAG) 2-1 [ Homo sapiens (human) ]

Gene ID: 100189130, updated on 10-Oct-2023

Summary

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Official Symbol
TRL-CAG2-1provided by HGNC
Official Full Name
tRNA-Leu (anticodon CAG) 2-1provided by HGNC
Primary source
HGNC:HGNC:34692
See related
AllianceGenome:HGNC:34692
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAL13
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Genomic context

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Location:
16q13-q21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (57299951..57300033)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (63095923..63096005)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (57333863..57333945)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903697 Neighboring gene ADP ribosylation factor like GTPase 2 binding protein Neighboring gene ReSE screen-validated silencer GRCh37_chr16:57292150-57292362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:57292975-57293530 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10887 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:57295195-57295750 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:57295751-57296304 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr16:57296526-57297296 and GRCh37_chr16:57297297-57298066 Neighboring gene plasmolipin Neighboring gene Sharpr-MPRA regulatory region 12895 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:57317662-57318323 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7527 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:57321027-57321239 Neighboring gene Sharpr-MPRA regulatory region 5344 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10889 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7529 Neighboring gene tRNA-Leu (anticodon CAG) 2-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10890 Neighboring gene ribosomal protein L23a pseudogene 91

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Leu (CAG) 2-1
  • transfer RNA leucine 13 (anticodon CAG)
  • transfer RNA-Leu (CAG) 2-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    57299951..57300033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    63095923..63096005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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