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TRT-AGT1-1 tRNA-Thr (anticodon AGT) 1-1 [ Homo sapiens (human) ]

Gene ID: 100189187, updated on 10-Oct-2023

Summary

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Official Symbol
TRT-AGT1-1provided by HGNC
Official Full Name
tRNA-Thr (anticodon AGT) 1-1provided by HGNC
Primary source
HGNC:HGNC:34750
See related
AllianceGenome:HGNC:34750
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAT8
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Genomic context

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Location:
17p13.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (8187160..8187233)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (8093324..8093397)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (8090478..8090551)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8170 Neighboring gene tRNA-Trp (anticodon CCA) 3-3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11679 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8171 Neighboring gene tRNA-Ser (anticodon GCT) 4-3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8172 Neighboring gene microRNA 4521 Neighboring gene tRNA-Ile (anticodon AAT) 5-5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11680 Neighboring gene BLOC-1 related complex subunit 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8092665-8093311 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8093312-8093957

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Thr-AGT-1-1
  • transfer RNA threonine 8 (anticodon AGU)
  • transfer RNA-Thr (AGT) 1-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    8187160..8187233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    8093324..8093397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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